Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq14 86.0 6e-12 >seq19 Length=17744385 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || | ||||| |||||||||||||| |||||||| ||| || || | Sbjct 3998965 ACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACC 3998906 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || || || |||||| ||||||| | |||||||| || || |||||||| || Sbjct 3998905 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3998846 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||||| |||| | ||| | ||||| |||| |||||||||| || | Sbjct 3998845 GTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAAT 3998786 Query 143149 CGTCTTGCCGGT 143160 |||||||| || Sbjct 3998785 GGTCTTGCCAGT 3998774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || | ||||| ||||||||||||||| |||||||| ||| | || | Sbjct 3995317 ACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACC 3995258 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||| || ||||| |||||| ||||||| | |||||||| || || |||||||| || Sbjct 3995257 GTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3995198 Query 143089 GTC 143091 ||| Sbjct 3995197 GTC 3995195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| ||| | ||| | || || || || || |||||||| ||| | |||| Sbjct 2910134 ACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACC 2910193 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || ||||| |||||| |||| ||||| ||||| || ||||| ||||||||||| Sbjct 2910194 ATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTT 2910253 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||| ||| | | ||| | ||||| | || || | || | ||| | Sbjct 2910254 ATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGAT 2910313 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| |||| ||||| || || || ||||| Sbjct 2910314 AGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || | ||| | || || ||||| || |||||||| || | | || Sbjct 3993460 ACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCC 3993401 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || ||||| |||||| ||||||| | |||||||||||| || |||||||| || Sbjct 3993400 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTT 3993341 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || ||| || | | || | ||||| | || || || |||| || | Sbjct 3993340 GTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGAT 3993281 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || ||||| || || ||||| Sbjct 3993280 GGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 >seq14 Length=28847931 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||| | ||| | || || || || || |||||||| || Sbjct 12556699 CCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12556758 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||||||||| |||||||||| ||||| || || || Sbjct 12556759 AGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 12556818 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || || | | ||| | || || |||| || ||| Sbjct 12556819 ATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACT 12556878 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| |||| || || || || |||||||| Sbjct 12556879 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506826532151760