Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 seq3 89.7 8e-13 >seq4 Length=20010643 Score = 120 bits (132), Expect = 4e-22 Identities = 363/560 (65%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| ||| | | ||||| ||||| ||||| ||| |||| || | | || Sbjct 16961002 ACCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAACACAGCGCGC 16960943 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || || || || || | ||| | |||||||| || ||| Sbjct 16960942 TACGTGGATCAGGGTGGCAACAAGCGTCCTGGAGCCTTTGCCATTTACTTGGAGCCCTGG 16960883 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || ||||| |||||||| | || | || ||| | || || ||| || Sbjct 16960882 CATTATGACGTCTTTGACTTCCTGGATCTTAAGAAGAACACAGGGAAGGAGGAGCAGAGA 16960823 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 || | || | || || || | ||| | || || ||||||||||| | || | Sbjct 16960822 GCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGGGTGGAAAGC 16960763 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| || ||||| ||| || ||||||||| ||| ||| Sbjct 16960762 AACCAGG------ACTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGAGTGC 16960709 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| || |||| |||| ||||| || ||| | || || | |||| Sbjct 16960708 TGGGGGGAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAGG---GTGAAG 16960652 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | || | | | |||||| | ||||| | | | ||| ||| || || Sbjct 16960651 CGCGTGGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAACCGGT 16960592 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || || ||||| |||||||| || || || | || |||||||| | || ||||| Sbjct 16960591 ACGCCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGC 16960532 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| || ||| |||||||| ||||| || |||||| || | |||||| | Sbjct 16960531 ACCATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGAGGTG 16960472 Query 97338 GCAGTTTGCGTTCTGGCATC 97357 || ||||| |||||| || Sbjct 16960471 GCCGTTTGTAATCTGGCGTC 16960452 >seq3 Length=16251686 Score = 89.7 bits (98), Expect = 8e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 69962 GGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGGCAACAG 70020 ||||| || || ||||||||||| | || ||||| || | || ||| || ||| | Sbjct 14876252 GGATCAACAAACGCCAAAGAGCTTT-CAGAGAAGGGGGTGAAAATCTGGGACGCCAATGG 14876194 Query 70021 TAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGC 70079 ||| |||||| |||| ||| || ||||| |||||| |||| ||||| ||||| | Sbjct 14876193 ATCTCGT-GCGTTTCTGGACAAGCTTGGTTTCACAGACAGAGAAGAAGGCGACCTGGGAC 14876135 Query 70080 CAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTA 70119 | |||||||| |||||||||||||||| || || |||| Sbjct 14876134 CCGTGTACGGTTTCCAGTGGAGGCACTTTGGTGCCGAGTA 14876095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740784609776680