Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq19 84.2 2e-11 >seq19 Length=17744385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| | | ||| | ||| || ||||| || || || |||||||| ||| Sbjct 2910123 CCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2910182 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || |||| ||||||||||| | || | ||| || ||||| ||| Sbjct 2910183 AGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 2910242 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| || | | |||| || || || ||| || | Sbjct 2910243 ATGCCTTCTTTATCCTGGATTTTAGCT-TTGATATTTTCAATTGTGTCACTAGGCTCCGC 2910301 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 2910302 CTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| || || | | | ||||| | || Sbjct 3993676 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3993617 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| | || || || ||||| ||||| ||||| ||||| Sbjct 3993616 TTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3993557 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||||||||| || || || Sbjct 3993556 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGT 3993497 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 3993496 GAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| || || | || |||||||| || || || |||||||| || Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||| || || || ||||| | || | ||| || ||||| || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || |||||| ||| | | ||||||||||| || ||| || Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || ||||| || || || || || || || || |||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCATA 2910578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362048354049063