Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq19 84.2 2e-11 >seq19 Length=17744385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||||||||||||||| |||||||| ||| | ||| | ||||||| || Sbjct 3995305 ATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCCAGCTG 3995246 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| ||| | || |||||||| ||||| ||| | |||||| ||||| Sbjct 3995245 TTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3995195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || |||||||||||||| |||||||| ||| || ||| | |||||||| || Sbjct 3998953 ATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTG 3998894 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| | || |||||||| ||||| ||| | |||||| ||||| ||||| Sbjct 3998893 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3998834 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCC--- 20181 || || | ||| | || | || || ||| | ||||||||| ||||| Sbjct 3998833 AGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGT 3998774 Query 20182 -GGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || |||||||| ||||| Sbjct 3998773 GAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419435614027683