Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19 174 4e-38 seq14 159 8e-34 seq13 91.5 3e-13 seq7 84.2 5e-11 >seq19 Length=17744385 Score = 174 bits (192), Expect = 4e-38 Identities = 179/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | ||||||||||| || || || ||||| Sbjct 3998979 ATGCCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCG 3998920 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || ||||||||||| || |||||||| |||||||| Sbjct 3998919 GACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGG 3998860 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || ||||||||||| | ||| || || || ||| Sbjct 3998859 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCT 3998800 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGT----GTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| ||||| ||| || || ||||| |||||||| Sbjct 3998799 ACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || || | || || ||||||| || || || ||||| || || ||||| | Sbjct 2910121 TTCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2910180 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | ||||| | ||| || ||||| ||||| |||||||| || || | ||| || || |||| Sbjct 2910181 AGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 2910240 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || |||||||||||||| || || ||||| | |||||| | || || ||||| || Sbjct 2910241 GAATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCG 2910300 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || |||||||| ||||| || ||||| ||||| |||||||| Sbjct 2910301 CCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || |||||| Sbjct 3993702 ATGCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 3993643 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || |||||||| |||||||| Sbjct 3993642 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 3993583 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | ||| || || || || Sbjct 3993582 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 3993523 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 3993522 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 158 bits (174), Expect = 3e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 104329 TATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 |||||| || | || | ||| || ||||||| || || || ||||| || || ||||| Sbjct 2912381 TATTCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTC 2912440 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| ||||| | ||| || || || || ||||||||||| || || | ||| || || || Sbjct 2912441 AGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGG 2912500 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || ||||| ||||| ||||| ||||| || || || | ||| ||||| ||||| Sbjct 2912501 TGGGATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTC 2912560 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| ||||| || ||||| ||||| | ||||||| Sbjct 2912561 AACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | | || ||||| | || || || ||||| || ||||||||||| Sbjct 2914294 TCCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGA 2914353 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||| | || || || || ||||| || ||||| || || ||||| || || ||||| Sbjct 2914354 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGG 2914413 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || || || || ||||| ||||| | ||| || || |||| || ||||| || || || Sbjct 2914414 AATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGAC 2914473 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 2914474 CTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| | | || || || || | || || || ||||| || || |||||| Sbjct 2910348 ATCCCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2910407 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| |||| | || || |||||||| || || | ||| || || || Sbjct 2910408 GAGAGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGG 2910467 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| || || || || | || |||| |||||| || ||||| Sbjct 2910468 GGGATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCC 2910527 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || || || || || |||||||| Sbjct 2910528 ACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || ||||| | |||||||||||| || || || ||||| || Sbjct 3995329 TCCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGA 3995270 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||| | ||||||||| || ||||| |||||||| || |||||||| |||||||| || Sbjct 3995269 GAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3995210 Query 104452 TATTCCTTCTTTATCCTG 104469 || ||||| || ||||| Sbjct 3995209 AATGCCTTCCTTGTCCTG 3995192 >seq14 Length=28847931 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||||||||| || | || || ||||| | || || || ||||| || || ||||||| Sbjct 12556697 TTCCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 12556756 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | || ||||| | ||||| |||||||| || || | ||| || || || | Sbjct 12556757 AAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGG 12556816 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || |||||||||||||| ||||| || || |||||||| | |||||| || || || | Sbjct 12556817 GGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCA 12556876 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 | || || || || ||||| ||||| || || || ||||| || ||||||| Sbjct 12556877 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATTT 12556927 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| || || | || || ||||| | | ||||| ||||| || || |||||| Sbjct 12557152 ATCCCCCCCCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCA 12557211 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| ||||| || |||||||| || || | ||| ||||| || Sbjct 12557212 GAAAGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGG 12557271 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| |||| || || |||||||| | |||||| | || || Sbjct 12557272 GGGATACCTTCTTTATCCTGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTCC 12557331 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| | | || ||||| || ||||| Sbjct 12557332 ACTTCCAGAGTGATGGTCTTGCCAGTCGGGTTCTTCACAAAGATTTGCAT 12557381 >seq13 Length=21921923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| | |||||||||| ||||| ||||| || || ||||| || || | ||||| | Sbjct 11703291 GAGCTCTGTGGTGGTATTTCATCTCCAAAGGTATTGAGTACCTGGACACAGTGTTCTTTA 11703232 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 |||| |||| ||||| || || ||| ||| | || || || || || | || |||| Sbjct 11703231 TCCTGAGAAAAAAATTCAACCAGGTTACTTTCTTGCACGTTTACCACCACTGCACCATGT 11703172 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | || | | ||||| || || |||||| | ||||||||||| Sbjct 11703171 TCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 11703129 >seq7 Length=13814722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || || ||||| || || || || || ||||| || || || || || Sbjct 13788542 GGAGAGCGGGTGGTGGCCTTTGCTGCAGTGGAGGGAATTTTCTTCTCTGGTTCCTTCGCT 13788601 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || ||||| ||||||||||| | ||||| ||||| || || || ||||| || || || Sbjct 13788602 GCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGCTTGACCTTCTCCAATGAGCTG 13788661 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 13788662 ATCAGCAGAGATGA 13788675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150961097808244