Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3 140 2e-28 >seq3 Length=16251686 Score = 140 bits (154), Expect = 2e-28 Identities = 143/184 (78%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||| || || || | |||||||||||| |||||||| ||||| ||||| Sbjct 14876085 CATGTCTTTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTC 14876144 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||| |||| || || ||| |||| ||| | | || ||||||||||| Sbjct 14876145 GCCTTCTTCTCTGTCTGTGAAACCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTC 14876204 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC- 25950 |||||| || ||||||||||| || |||||||||| |||||| || |||| ||| ||| Sbjct 14876205 CCAGATTTTCACCCCCTTCTCTGAAAGCTCTTTGGCGTTTGTTGATCCCTGTGATAAACA 14876264 Query 25951 CACA 25954 |||| Sbjct 14876265 CACA 14876268 Score = 111 bits (122), Expect = 1e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | ||||||| Sbjct 14874793 GCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGAACTCCCAGCCCCATG 14874852 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | | || | |||||| |||||||| |||||||| | || | |||||| |||||||| Sbjct 14874853 T-CAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACACACGTAGAACTGACA 14874911 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 |||| || || || || || || || ||| Sbjct 14874912 GATGGCGTGACATGGCGGCAGGGCCATGAGG 14874942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340014717107439