Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq22 140 5e-28 seq14 87.8 3e-12 >seq2 Length=20052193 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 8705 ACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCT 8764 |||||| | ||||| ||| ||| | || || | |||||||| |||| || || | | Sbjct 5515870 ACGTTGTTGCAGACGAGATTCTGCAAAGAGGCTGTGTTGACGATTTCAAAGCCTACTTTT 5515929 Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || |||||||||||||||||||| | |||||||||||| ||| |||| || || Sbjct 5515930 CCACCAAAGGTGCTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTCCCCATCAGTCCC 5515989 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || ||||| || |||||||| | ||| | ||| |||| || ||||||| || || | | Sbjct 5515990 TTCAGGGAGAAAGGAGCCCCTACCTCCACCATGGTCTCCCCAAAGATGGAATTAGGTCTG 5516049 Query 8885 GGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 || ||||||| |||||| || | ||| ||||| ||||| |||| | |||||| Sbjct 5516050 GGTTTTTCCA-CAAGAAGGCCAGGGTAAAACTCTACAGCGTCGACATGTCCGTA 5516102 >seq22 Length=21910988 Score = 140 bits (154), Expect = 5e-28 Identities = 181/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| || |||| ||| || || || |||||||| | || || || Sbjct 8032502 ACGGACACCACCTGCTGTTGAGACACACCAGCTTCTTTATAGTTGCTGTTTTAACTATGT 8032443 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || || |||||| ||||||||||| || |||||||| |||| || |||||| | Sbjct 8032442 TGAAACCAGTGTCTCCTCCGAAGGTGCTTGGCTTCCAGTACTCCGGAGAACAGATGGGAT 8032383 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| || | Sbjct 8032382 TACCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCAACCATACTCTCACCAAATA 8032323 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| || | || | || |||| || || ||||| ||| ||||||| ||| || |||| Sbjct 8032322 TGGCATTAGAGCGCGTTTTCTCCAGCAGGACTCCGGGGTAGAACTCCAAAGCATCAATGT 8032263 Query 8931 CTCCGTAAAG 8940 | ||||| || Sbjct 8032262 CACCGTAGAG 8032253 Score = 129 bits (142), Expect = 8e-25 Identities = 180/249 (72%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || |||||||| | ||||||||| ||||| || ||||| ||| |||||| Sbjct 8030197 TCACCAATGATGATGAGCCTAGTGGTCTGGAACAGCTGCTCGTCGTCCCAGGTGGGATGT 8030138 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||| || | || || | ||||| || ||||| ||||| | || |||||||| Sbjct 8030137 TCTGCTTTAAGGATGTCACAGATCCTGTTATGCTCCCTCAGCCATAAGGTGGCGTACATG 8030078 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||||||||||| | ||||||| |||| ||||||| ||||||||| | | | || Sbjct 8030077 GTGAGACCAGGCAGGATGCCAAAAACCTCCTGACCGATAGCCAGACGTTGCTCTGCAGGA 8030018 Query 9790 A---CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTG--ACCGAGGGGGGATACA 9844 | |||| ||| ||||||||||| ||| |||| ||| | || || ||||| || | Sbjct 8030017 AAACCTTC---AGGGTAGATCATGTGTACCGGGAC--CTTGGACACAGACGGGGGGTAGA 8029963 Query 9845 TTTCACCGT 9853 || |||| Sbjct 8029962 CGTCCCCGT 8029954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/130 (77%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAA--TCAGTCCTAA 10086 || ||||| ||||| |||||||| |||||| | | | || | | | |||||| ||| Sbjct 8022474 CTCACCCCGTGTCCTAGTCCTTTGGTGAAGCCAG--CATCCCTTCCATGGTCAGTCTTAA 8022417 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 |||||||||| || ||||| ||| | | ||||||||||| || ||||| ||||| |||| Sbjct 8022416 AAAACTGGTGGGTAAAATGCTGGGCCATGAAGGCAAACATCAAATTGGTTCCCTGAGGAT 8022357 Query 10147 CGGGAGTGAA 10156 |||| |||| Sbjct 8022356 CGGGTCTGAA 8022347 >seq14 Length=28847931 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 10080 GTCCTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCC 10139 ||| |||| |||||||| |||||||| || |||| || |||||||| | |||||||||| Sbjct 28027117 GTCTTAAAGAACTGGTGGGTGAAATGCTGTGCAAAGAAAGCAAACATGAGGTTGGTGCCC 28027058 Query 10140 TGGGGATCGGGAGTGAAGGTCCT 10162 ||||||||||| | || ||||| Sbjct 28027057 TGGGGATCGGGTCTAAAAGTCCT 28027035 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || ||||||||||| ||||| || | || || || || | Sbjct 28030756 CAAAGCCCACTTTGCCTCCAAAGGTGCTGGGCTTCCAATATTCTGGAGAACATATAGGAT 28030697 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | |||||||||||| || || ||||| |||| || | ||||| || || || | Sbjct 28030696 TTCCTAGGAGGCCTTTGAGTGAGAAAGGAGCTCCCATTTCCACCATGCTTTCCCCAAATA 28030637 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 ||||||| || | | || |||| || || |||| || || || | | || |||| Sbjct 28030636 TGGCGTTAGGTCTTGTTTTCTCCAACATTAAACCGGGATAAAATTCGAGTGTGTCAATGT 28030577 Query 8931 CTCCGTAAAG 8940 ||||||| || Sbjct 28030576 CTCCGTAGAG 28030567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708262264991920