Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq14 87.8 2e-12 >seq19 Length=17744385 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||||| || | ||| | || ||||| || ||||| || | ||| || || Sbjct 2912609 CATTCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTC 2912668 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || |||| | ||| |||| ||| || || ||||||| | ||| ||||| ||||| Sbjct 2912669 GGACAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGG 2912728 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || || || ||||| | || || | ||| | | | |||||| | | || Sbjct 2912729 TGGGATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTC 2912788 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 || || | ||||||||||| ||||| || ||||||||||| |||||||| | |||| Sbjct 2912789 AACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTTGACAA 2912847 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || ||||||| | ||||||||||| || ||||| ||||| || Sbjct 3993400 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTT 3993341 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || |||||||| || | | ||||||| | ||| || || |||| |||| Sbjct 3993340 GTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCA-CTTGGCTCAACCTCAAGGGTGA 3993282 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || || || |||||||||||||| Sbjct 3993281 TGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || || || | || | || || ||||| || | |||||| || Sbjct 2914291 CAGTCCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTC 2914350 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | |||| | ||||||||||||||| || |||| || | ||| ||||| ||||| Sbjct 2914351 AGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGG 2914410 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| || || ||||| | || || | || ||| | | ||||| | | || Sbjct 2914411 AGGAATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTC 2914470 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||| || ||||| || || || ||||| |||||||| Sbjct 2914471 GACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || ||||||| | || |||||||| || ||||| ||||| || Sbjct 3993628 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3993569 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | |||||| | | || || |||| || || Sbjct 3993568 GTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 3993509 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || ||||| || ||||||||||||| Sbjct 3993508 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATGC 3993471 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || ||||||| | || |||||||| || ||||| ||||| || Sbjct 3994384 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3994325 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | |||||| | | || || |||| || || Sbjct 3994324 GTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 3994265 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || ||||| || ||||||||||||| Sbjct 3994264 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATGC 3994227 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || |||||||| || ||||| || || || Sbjct 3999133 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTT 3999074 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||| || | | |||||| | | || || |||| || || Sbjct 3999073 GTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAAT 3999014 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || ||||| |||||||||||||||| Sbjct 3999013 GGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATGC 3998976 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || |||||||| || ||||| ||||| || Sbjct 3999361 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3999302 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | |||||| | | || || |||| || || Sbjct 3999301 GTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAAT 3999242 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || ||||| || ||||||||||||| Sbjct 3999241 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATGC 3999204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || |||| |||| || | || | ||| || ||||| || | ||| || ||| Sbjct 2910122 TCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2910181 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | |||| |||||| |||||||| || ||||||| | | ||||| |||||||| Sbjct 2910182 GAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 2910241 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| |||||||| || | ||||| || |||| | | |||||| | || | Sbjct 2910242 AATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGC 2910301 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || ||||| || ||||| |||||||||||||| Sbjct 2910302 CTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | ||| | ||| | || || ||||| || | ||| || || Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG-- 2910408 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || | | |||| ||| || || ||||||| | | ||||| ||||| | Sbjct 2910409 AGAGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGG 2910468 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CG 94957 | || |||||||| || | ||||| ||||| | | | | || ||| | |||| | Sbjct 2910469 GGATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCA-CTTGGTTCC 2910527 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 2910528 ACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| ||||| ||||||| | | ||||| ||||| || || || ||||| Sbjct 2912456 ATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTT 2912515 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || || ||| | | ||||| | | || || || | ||||| Sbjct 2912516 GTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGAT 2912575 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || ||||||||||| | |||||| Sbjct 2912576 GGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 >seq14 Length=28847931 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||| | | ||||| ||||| || ||||||||||| Sbjct 12556770 ATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTT 12556829 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || |||||||| | | || ||| | | || || || | ||||| Sbjct 12556830 ATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGAT 12556889 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||| ||||| Sbjct 12556890 GGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448125091299480