Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 206 4e-49 seq7 178 2e-40 seq8 174 2e-39 seq1 170 3e-38 seq19 150 3e-32 >seq5 Length=19279693 Score = 206 bits (228), Expect = 4e-49 Identities = 215/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| ||||||||||| || || || Sbjct 15396255 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 15396314 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||||||||||||||||||| |||||||| | |||| || |||| Sbjct 15396315 CCGCCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGAC 15396374 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 15396375 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 15396434 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || ||||| |||| | || || Sbjct 15396435 GCACGCCAAGAGAAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAAGAGACAGGG 15396494 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAAC 16713 ||| | | || || || ||| ||||| | || | ||| || Sbjct 15396495 CCGCACTCTGTACGGATTCGGAGGTTAAACCTCAACTCAGAC 15396536 Score = 158 bits (174), Expect = 2e-34 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16481 AAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTC 16540 || || || ||||| |||||||||||||||||||||||||||||| |||||||| | || Sbjct 15389496 AAACCCGCCATCCGCCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATC 15389555 Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || || |||| |||| ||| | ||| ||||||| ||| ||| |||| ||| || || Sbjct 15389556 TACGAGGAGACCCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTC 15389615 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| ||||||||||| || | ||||| || ||| |||||||| | || ||||| || Sbjct 15389616 ACCTACACCGAGCACGCCAAGAGAAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTG 15389675 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | || ||||| | | || || || ||| ||||| | || | ||| Sbjct 15389676 AAGAGACAGGGCCGCACTCTGTACGGATTCGGAGGTTAAACCTCAACTCA 15389725 >seq7 Length=13814722 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| || || Sbjct 10491242 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACAAAGCCCGCCAT 10491301 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||||||||| |||||| |||| || || |||| || |||| Sbjct 10491302 TCGCCGTCTAGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 10491361 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| | ||||| ||| ||| || | ||| || || || ||||| Sbjct 10491362 TCGTGGTGTTCTCAAGGTTTTCCTGGAGAACGTGATTCGTGACGCCGTCACGTACACCGA 10491421 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| |||||||| | ||||| || |||| | || || Sbjct 10491422 GCACGCCAAGAGGAAGACGGTCACTGCCATGGATGTGGTCTACGCTCTGAAGAGACAGGG 10491481 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 10491482 CCGCACCCTGTACGGATTCGGAGGTTAA 10491509 >seq8 Length=30151083 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 16831589 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCTAT 16831648 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 16831649 CCTCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 16831708 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 16831709 CCGCGGTGTCCTCAAGGTCTTCCTGGAGAACGTGATCCGTGCCGCCGTCACCTACACCGA 16831768 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | |||||| | || ||||| |||| | || || Sbjct 16831769 GCACGCCAAGAGGAAGACAGTGACCGCTATGGATGTGGTGTATGCTCTGAAGAGGCAGGG 16831828 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 16831829 CCGCACTCTGTACGGCTTCGGAGGTTAAACT 16831859 Score = 158 bits (174), Expect = 2e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16476 TCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGAT 16535 |||||||||| |||||||| ||||||||||| ||||| ||||| |||||| |||| || Sbjct 16824539 TCACCAAGCCGGCTATCCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGCC 16824598 Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | ||| ||||||| ||| ||| |||| ||| | Sbjct 16824599 TGATCTACGAGGAGACCCGCGGTGTCCTCAAGGTCTTCCTGGAGAACGTGATCCGTGACG 16824658 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| |||||||||||||| | ||||| || ||| | |||||| | || |||| Sbjct 16824659 CCGTCACCTACACCGAGCACGCTAAGAGGAAGACAGTGACCGCTATGGATGTGGTTTATG 16824718 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | |||| | || ||||| | | || ||||| ||| ||||| || Sbjct 16824719 CTCTGAAGAGACAGGGCCGCACTCTGTACGGTTTCGGAGGTTAAACT 16824765 >seq1 Length=34528841 Score = 170 bits (188), Expect = 3e-38 Identities = 201/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| |||||||| || || || || Sbjct 33979706 CGCCAAGCGTCACCGTAAAGTGTTGCGTGATAACATCCAGGGAATCACTAAACCCGCCAT 33979647 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| || |||||||| |||||| |||| || || |||| || |||| Sbjct 33979646 CCGTCGTCTGGCTCGCCGCGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 33979587 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | || | ||||| ||| ||| || | |||||| || ||| || || Sbjct 33979586 CCGTGGTGTTCTCAAAGTGTTCCTGGAGAACGTGATTCGTGATGCCGTCACCTACACTGA 33979527 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| |||| | || || Sbjct 33979526 GCACGCCAAGAGAAAGACTGTGACCGCTATGGATGTGGTGTATGCTCTGAAGAGACAGGG 33979467 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | || || || ||| ||||| ||| Sbjct 33979466 CCGCACTCTGTACGGATTCGGAGGTTAAGCTT 33979435 Score = 170 bits (188), Expect = 3e-38 Identities = 201/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| |||||||| || || || || Sbjct 33981363 CGCCAAGCGTCACCGTAAAGTGTTGCGTGATAACATCCAGGGAATCACTAAACCCGCCAT 33981304 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| || |||||||| |||||| |||| || || |||| || |||| Sbjct 33981303 CCGTCGTCTGGCTCGCCGCGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 33981244 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | || | ||||| ||| ||| || | |||||| || ||| || || Sbjct 33981243 CCGTGGTGTTCTCAAAGTGTTCCTGGAGAACGTGATTCGTGATGCCGTCACCTACACTGA 33981184 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| |||| | || || Sbjct 33981183 GCACGCCAAGAGAAAGACTGTGACCGCTATGGATGTGGTGTATGCTCTGAAGAGACAGGG 33981124 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | || || || ||| ||||| ||| Sbjct 33981123 CCGCACTCTGTACGGATTCGGAGGTTAAGCTT 33981092 >seq19 Length=17744385 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 16936564 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 16936505 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || ||||| |||| || || |||| || |||| Sbjct 16936504 CCGACGTCTGGCTCGGCGCGGCGGCGTGAAGCGAATCTCCGGCCTGATCTACGAGGAGAC 16936445 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 16936444 CCGCGGTGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 16936385 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | ||||| || |||| | || || Sbjct 16936384 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTCTACGCTCTGAAGAGGCAGGG 16936325 Query 16672 CCG 16674 ||| Sbjct 16936324 CCG 16936322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048097197599