Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 565 3e-156 seq7 111 2e-19 seq18 102 1e-16 seq19 93.3 5e-14 >seq4 Length=20010643 Score = 565 bits (626), Expect = 3e-156 Identities = 1315/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || | | |||||| || || || |||| | | ||| Sbjct 16959794 CTGGATGGATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCTCT 16959853 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || ||||| || || || | || || |||||||||| ||||| Sbjct 16959854 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCT 16959913 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || || || | ||||| || || |||| || || || Sbjct 16959914 GCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 16959973 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | ||| || || | || | | | ||| Sbjct 16959974 GGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGAT 16960033 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | |||| | ||| || || | || | | Sbjct 16960034 CTTCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGG--CGTCTTCTCCCACATGTCG 16960091 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || || ||| | || ||| | || || || || || || || Sbjct 16960092 TACTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCT 16960151 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 |||| || || || || ||||||| || |||| || ||||| |||||||| | | Sbjct 16960152 GCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATG 16960211 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| |||| ||||| || || | || || || ||||| || Sbjct 16960212 TTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCC 16960271 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || |||||||| || || || || || | ||| || ||| ||||||| || || Sbjct 16960272 AGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGC 16960331 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | |||||| || || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 16960332 ACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACC 16960391 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCT---ATTACAAACATGTTCAAGGCAACA 62897 | |||||||| || ||| | || ||| | || ||||||| | || | Sbjct 16960392 TGTGTCAGTTTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATG 16960451 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || ||||||||||||||||| ||||| | | | || | | || || ||||| Sbjct 16960452 GACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCAC 16960511 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 || || || |||||||| || || | || || || || ||||| |||| || || || Sbjct 16960512 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 16960571 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||| | || ||||| ||||| |||| || || || || || | ||| | Sbjct 16960572 TTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGC 16960631 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTA--TAGTGTATACAATC 63135 | ||||||| | | || |||| ||| | || || ||||||| | || Sbjct 16960632 TGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGA-GCTC 16960690 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 ||||||| || ||||| | ||||| || ||||| ||| |||||||| | | Sbjct 16960691 -CTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTG 16960749 Query 63196 ACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 |||| || || | ||| ||| | ||||| || || ||||| ||||| | || Sbjct 16960750 ACCAGTCCTGGT--TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 16960807 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || ||||||| | ||| || ||||| || ||||| ||||| |||||||| ||||| | Sbjct 16960808 GAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTC 16960867 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | ||| ||||||| || |||||||| ||||| | ||||||| || ||||| || Sbjct 16960868 AAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCC 16960927 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 |||||||| | ||| | || ||||| ||||| ||||||| ||| || | | ||||| Sbjct 16960928 ACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTT 16960987 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 ||| | || ||||| || | ||| ||||| ||| ||| | || |||| | | Sbjct 16960988 TGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCAC 16961047 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || ||| || ||||| | ||||| || | |||||||||||| || Sbjct 16961048 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCC 16961107 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || ||||| || || ||||| || || || ||||| |||| ||| | || | || Sbjct 16961108 TTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGT 16961167 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 16961168 TCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 16961227 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || | || || | ||| ||||| | || || || || | || ||||| | ||| Sbjct 16961228 GGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCAT 16961287 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| || | || | | ||| ||| || |||| || |||||| | |||| ||| Sbjct 16961288 GTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGT 16961347 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||| ||||||| || ||||||| |||||||| || ||||||| || Sbjct 16961348 CTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAGGCG 16961407 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCC 63912 || || | | || ||| |||| || | ||| || || || || || || | Sbjct 16961408 GTCTTTGTTCTCCAGAATTATGTCCAGAGT-CTCCTTGGAGATCATGGGGGA--GTGACG 16961464 Query 63913 CATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63970 | || | || || ||||||||| | | || |||||||||||| | || | || || Sbjct 16961465 TTTGTTCAGGGGGTTGACATAGTTGTACAGGTCTTCCATCACTTCATTGAACACCTTCTT 16961524 Query 63971 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || |||||||| || || || || || || | || || || |||||||| || || || Sbjct 16961525 GGTCTCCTTGTGCAGGTTGGAGACAGCGATGCGTGCAGCCAGGATGGCATAGTCGGGGTG 16961584 Query 64031 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090 || || || ||||| | || || || ||||| ||||||| || || || || || Sbjct 16961585 TTTGGTTGTGAGGGTGGCAGTGATCTCTGCGGCCAGTGTGTCCAGCTCAACTGTGGTCAC 16961644 Query 64091 TCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGT 64150 |||||| || | || || || |||||||| | || | ||||| | || | Sbjct 16961645 TCCATTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGA 16961704 Query 64151 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGACA 64205 ||| | |||||| || | || |||||||| |||||||| |||||||||||| Sbjct 16961705 GTTCAGGCCATAGCAGAGCTTCTGGATACGAGAGGTGATTTTGTCAAACATGACA 16961759 >seq7 Length=13814722 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| |||||| || ||||| ||||| ||||| || ||||||||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 33446 C 33446 | Sbjct 13788557 C 13788557 >seq18 Length=15207555 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || || || | || || || ||||||||||| | ||| | Sbjct 10925818 CCTCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCT 10925759 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | |||| ||||||||| ||||| || |||||||| || || |||||||||| Sbjct 10925758 TGAGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 10925699 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||| || Sbjct 10925698 CCACAATTCGCTCACC 10925683 >seq19 Length=17744385 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || || | ||| || || || || || || || || || ||||||| || ||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 || || || ||||||| || || ||||||||| | || ||||||||| |||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || || ||| | || | || ||||| |||||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622716374701880