Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 seq4 82.4 7e-11 >seq19 Length=17744385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| ||||||| || || ||||||| || | |||||| | || | || | | | Sbjct 2914521 ATGCAGATGTTTGTCAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 2914462 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| ||||| ||||| || || || ||||| || || Sbjct 2914461 GACACAATAGAGAACGTGAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 2914402 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||||||| | | |||||||| || || |||| | | || ||||||||| Sbjct 2914401 CAGAGACTCATATTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGACTATAAC 2914342 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || || ||||||| || | | || ||||||||| Sbjct 2914341 ATCCAGAAGGAGTCCACCCTCCATCTTGTTTTACGCCTCAGAGGAGGA 2914294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || || || ||||| || || || || | | |||||||| || ||| Sbjct 3995195 GACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAA 3995254 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | | | | || |||||| ||||| |||||||||||||| | ||||| |||||| Sbjct 3995255 GACGGTCGTACTCTCTCCGACTACAACATCCAAAAAGAATCTACACTTCATCTTGTCCTG 3995314 Query 26982 AGACTTAGAGGAGGA 26996 | ||||| || ||| Sbjct 3995315 CGTCTTAGGGGTGGA 3995329 >seq4 Length=20010643 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 148262 GTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACACTCGTCGGGGCA 148321 ||| || |||||||| | | || |||| |||| | |||||||||||| ||| || Sbjct 16960682 GTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACA 16960741 Query 148322 CATCAATGACCATTTCCCTCCTGTCTTT--ACCCTCTTCATAAACAGATCAGGTGTCCAC 148379 ||| | |||||| | ||| | |||| ||||||||||| ||||| ||||| ||||| Sbjct 16960742 CATGAGTGACCAGT--CCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCAC 16960799 Query 148380 ATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATTGCGCTTTAGATCC 148439 ||||| | | ||||| || || || ||||| || | || ||| |||||| Sbjct 16960800 ATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCC 16960859 Query 148440 aaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTA 148477 | || ||| ||||| ||||| ||||| | ||| Sbjct 16960860 AGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTA 16960897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478485037630960