Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 4e-13 seq19 87.8 5e-12 >seq3 Length=16251686 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 ||||| || || || ||| ||| || || ||||| ||||| | |||||||| ||| Sbjct 14876246 ACAAACGCCAAAGAGCTTTCAGAGAAGGGGGTGAAAATCTGGGACGCCAATGGATCTCGT 14876187 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 | ||||| || ||||| | |||| |||||||| || || ||||| || ||| Sbjct 14876186 GCGTTTCTGGACAAGCTTGGTTTCACAGACAGAGAAGAAGGCGACCTGGGACCCGTGTAC 14876127 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || ||| | ||||||||||| || |||||| ||||||| Sbjct 14876126 GGTTTCCAGTGGAGGCACTTTGGTGCCGAGTACAAAGACATGCAC 14876082 >seq19 Length=17744385 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 ||| |||| ||| |||| || |||||||||| |||| ||||| || |||||||| Sbjct 13835796 CAGGACATCGCAGAGATTCCTGACGATCTGAAGCAGCTTTATAAAACGGTGTGGGAAATC 13835855 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 ||| | |||| || | | ||||| || |||||||| |||| ||| ||||||||| Sbjct 13835856 TCCCAGAAAACTGTCCTGAAGATGGCAGCAGATCGCGGCGCTTACATCGACCAGAGCCAG 13835915 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || | ||| | ||| | |||| | || || ||| || | |||||| ||||| Sbjct 13835916 TCTCTCAACATCCACATAGCCGAGCCCAACTACGGCAAACTGAGCAGCATGCACTTCTAT 13835975 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 13835976 GGCTGGAA 13835983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302858585080826