Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 >seq19 Length=17744385 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| ||||||| || || ||||||| || | || ||| | || |||||| ||| | Sbjct 2914521 ATGCAGATGTTTGTCAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 2914462 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || ||| ||||| ||||| || ||||| ||||| || || Sbjct 2914461 GACACAATAGAGAACGTGAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 2914402 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||||| || || || |||| | | | || || |||||| Sbjct 2914401 CAGAGACTCATATTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGACTATAAC 2914342 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACT 24220 || || || || || || | ||| | || ||| | | ||||||||||| Sbjct 2914341 ATCCAGAAGGAGTCCACCCTCCATCTTGTTTTACGCCTCAGAGGAGGACT 2914292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | |||||| | ||||| ||| ||| |||||||| || | || || Sbjct 3998774 ACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGTGACACCATTGAAAATGTAAAGGCT 3998833 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||| |||||||| || || ||||| ||||| ||||| | | || ||| Sbjct 3998834 AAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGAAAG 3998893 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || || ||||||| | | | ||| || ||||| |||||||||||||| ||||| Sbjct 3998894 CAGCTGGAAGATGGTCGTACTCTGTCCGACTACAACATCCAAAAAGAATCTACGCTTCAT 3998953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429780675274665