Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 8e-16 >seq19 Length=17744385 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| || || ||||||||| | ||| ||| |||| Sbjct 3998978 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999037 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | ||||| ||| || || || || ||| | ||| ||||||| Sbjct 3999038 GACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3999097 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||| || | ||||||| | ||| | | || || ||| Sbjct 3999098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3999157 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || |||||||| || Sbjct 3999158 ATCCAGAAAGAGTCCAC 3999174 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || |||||| || ||||| || || ||||| || || ||||| ||| | || ||| | Sbjct 3993241 AACAATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 3993300 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || |||||| ||| | || || ||| || || || |||||| | ||| || Sbjct 3993301 AAGTGACACTATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 3993360 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||||| || || | ||| |||||||| | ||||||| | || | | || || Sbjct 3993361 TCAGCAAAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCCCCCTCTCTGACTA 3993420 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| || Sbjct 3993421 CAACATCCAGAAAGAGTCCAC 3993441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425190334245160