Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 241 1e-58 seq19 113 4e-20 seq14 86.0 6e-12 >seq4 Length=20010643 Score = 241 bits (266), Expect = 1e-58 Identities = 939/1457 (64%), Gaps = 42/1457 (3%) Strand=Plus/Plus Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| |||| || | |||||||| ||||||||||| || ||||| | || ||||||||| Sbjct 16959933 GTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATG 16959992 Query 145169 TACGCCACCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTAC 145226 |||| || | | || || | | || || || ||| | ||||| ||| Sbjct 16959993 GGGGCCATCAGCAGACTG--TTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGG 16960050 Query 145227 CCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGC 145286 |||| ||||| || || ||| || ||||||||||||||||| | ||||||| || Sbjct 16960051 CCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGC 16960110 Query 145287 TGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTC 145345 || | || |||| | | || | | ||||| | | || |||||||| || Sbjct 16960111 TGACTGGAGACCCTTCGTACGT-CTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTG 16960169 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 ||||| || ||| || | || || |||||| ||||| ||||||||||| |||||| Sbjct 16960170 GCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCA 16960229 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 ||| || | || | |||| ||| | || || || || || ||||| | || | Sbjct 16960230 GGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATT 16960289 Query 145466 CCGATGGGCCGATGTTTCATGTTGC-----TCATCCTCGCCGACTCGATAGGATATCGAT 145520 || || |||| || | ||||| ||| ||||| || ||||| | | ||| Sbjct 16960290 CCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTT-GAT 16960348 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 ||| || || || |||| |||| || | ||||| || | || || || | Sbjct 16960349 ----GTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGT 16960404 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 |||||| | || | || | || | | |||| ||||| ||||||| || Sbjct 16960405 TGAAGTCATA---AGTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGAT 16960461 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 ||||||| ||| ||| || | | | |||| | ||||| || | ||||| ||||| | Sbjct 16960462 TACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGC 16960521 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | |||||||| ||||| || ||||| || || ||||||||||| ||||| |||||||||| Sbjct 16960522 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCA 16960581 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCAC 145820 |||| || || || || ||||| ||| | || | || | || || Sbjct 16960582 TGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCT 16960641 Query 145821 GCACCTGCTGCTGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 |||| ||| | | |||| |||| || || | ||||||||||||| ||| Sbjct 16960642 TCACCACGCGCT-TCACCCTCCCTTCCTTC-TCATACCTAGTGTAGAGCTCCTCGAACTT 16960699 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 || |||| ||| ||| |||||||||| |||||||||| || ||||| | Sbjct 16960700 CTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTG 16960759 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCG 145998 |||| | || | || ||| |||| || || | ||||| ||||| | | || || Sbjct 16960760 GTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCG 16960819 Query 145999 CGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGC 146058 |||| | ||||| || |||| ||| | || || | | ||| ||| Sbjct 16960820 CGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATA 16960879 Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCAC 146115 ||||| || || | || | ||| | |||||| || ||||||||||| ||||| Sbjct 16960880 ATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCAC 16960939 Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTT 146175 || || | |||||||| | || | || ||||||| | | |||| | | ||||| Sbjct 16960940 GTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTT 16960999 Query 146176 CGT---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 || || | || | | || ||| | | ||| ||| ||| |||| || Sbjct 16961000 GGTCCCAGCG---ATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCC 16961056 Query 146233 GCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCT 146292 |||| | ||||||| || |||||||| ||||| || |||||||| || ||||| Sbjct 16961057 GCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCT 16961116 Query 146293 ATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCG 146348 ||| |||| ||| | ||||| ||||| | ||| ||| | | ||| || || | Sbjct 16961117 GTCGTCCTTC--ATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGC--CGGTTGGTTCCTG 16961172 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTT 146407 | ||| | ||| || |||||| || || || || || | || || || || Sbjct 16961173 CGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTA 16961231 Query 146408 TCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGT 146467 | ||| ||| | | || || | || || || | || || |||||||||||||| Sbjct 16961232 TTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCATGTGC 16961291 Query 146468 TGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTG 146527 ||||| ||||| ||||||| || ||||| | || ||| ||||||| || ||| Sbjct 16961292 TGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTG 16961351 Query 146528 TATCCGAAAAATTTGTA 146544 | || || || ||||| Sbjct 16961352 AAGCCAAAGAAGTTGTA 16961368 >seq19 Length=17744385 Score = 113 bits (124), Expect = 4e-20 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 |||||||| | ||||| || |||||||||||||||||||| || ||||| || || ||| Sbjct 13834225 ACGATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTC 13834166 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 |||||||| |||||||||||||||||||| || Sbjct 13834165 CTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 13834134 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | ||||| || |||||||| || |||||||| ||| Sbjct 2910123 CCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2910182 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||||||||| ||||| || |||| | |||||||||||| ||||| Sbjct 2910183 AGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 2910242 Query 131128 ATTCCTTCTTTGTCGGTGATTTT 131150 || |||||||| || |||||| Sbjct 2910243 ATGCCTTCTTTATCCTGGATTTT 2910265 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | ||| | ||| ||||| || || |||||||| || Sbjct 3999432 CCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3999373 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 3999372 AGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999313 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | ||| | || || ||| ||| | Sbjct 3999312 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACT 3999253 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || || ||||| ||||| ||||||||| Sbjct 3999252 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3999205 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| || ||||| | || | ||| |||||||| || |||||||| || Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| | || | |||||| || || |||| | |||||||||||| || ||| Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||| | | ||| | ||||| | | || | Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || ||||| || || ||||| |||||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | ||||| || |||||||| || |||||||| || | ||||| Sbjct 2912397 CGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCA 2912456 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| | |||||||||||| || ||||| || |||||| Sbjct 2912457 TCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTG 2912516 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||| | || ||| ||| || | || | ||| | | Sbjct 2912517 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATG 2912576 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| || || | |||||| Sbjct 2912577 GTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | ||| | ||| ||||| || || |||||||| || Sbjct 3999205 GCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3999146 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 3999145 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3999086 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 3999085 AATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC 3999026 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || || ||||| || || ||||||||| Sbjct 3999025 TTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | ||| | || || || ||||| |||||||| ||| Sbjct 3998977 GCCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGA 3998918 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || |||||||| || || |||| | | |||||| || || || Sbjct 3998917 CAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3998858 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| | | || | || || ||| ||| | Sbjct 3998857 AATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTAC 3998798 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAG----TTTTTACGAAAATCTGCATGACT 131238 || | ||||| ||| || || || || | | || || ||||||||||||||| Sbjct 3998797 TTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCATGACT 3998742 >seq14 Length=28847931 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | ||| |||||||| || |||||||| || Sbjct 12556699 CCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12556758 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||| || || || |||| | |||||||||||| || ||| Sbjct 12556759 AGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 12556818 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||||| | || | ||||| ||| ||| | Sbjct 12556819 ATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACT 12556878 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || || ||||| Sbjct 12556879 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471837901557120