Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq14 91.5 1e-13 >seq19 Length=17744385 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||||||||| || ||||||||||| | Sbjct 2912385 CCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2912444 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || || ||| | || || ||||| ||||| || Sbjct 2912445 AGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 2912504 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| ||||| | | | ||||||| ||| || Sbjct 2912505 ATGCCCTCTTTGTCCTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCGCTGGGTTCAA 2912562 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||||||| || || ||||| ||||| ||||| | ||||||| Sbjct 2912563 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | | || | ||| || ||||||||||| || ||||| ||||| | Sbjct 2914295 CCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAG 2914354 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||| ||| | || || | ||| ||||| ||| Sbjct 2914355 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGA 2914414 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || | | ||||| | | | ||||||| |||||| Sbjct 2914415 ATGCCCTCCTTGTCCTGGATCTTGGAT--TTCACGTTCTCTATTGTGTCGCTGGGCTCGA 2914472 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || |||||||| |||||||| Sbjct 2914473 CCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||||| | || | || Sbjct 2910137 CAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 2910196 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| | |||||||| ||| | || || ||||| ||||| ||| | ||| ||||| || Sbjct 2910197 CTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATC 2910256 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| || | | | | ||||| | ||||||| |||| ||||| Sbjct 2910257 CTGGATTTTAGCT--TTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATA 2910314 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| ||||||||||| |||||||| Sbjct 2910315 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | ||| | ||||||||||| || ||||||||||||| | Sbjct 2912613 CCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2912672 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || || || ||| | || || | ||| ||||| || Sbjct 2912673 AGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2912732 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | ||| | | | | ||||| | |||||| Sbjct 2912733 ATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACC 2912792 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||||||| || ||||| ||||| ||||| |||||||| ||| Sbjct 2912793 TCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTTG 2912843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || |||||||| || || ||||||||||| | | ||| | | || Sbjct 3999190 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 3999131 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | |||||| ||||| Sbjct 3999130 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 3999071 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| ||| || | | | ||||| | |||||| ||| | ||| ||| Sbjct 3999070 CTGGATCTTTGC--CTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATG 3999013 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||||||||| |||||||| Sbjct 3999012 GTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16705 TTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTC 16764 || |||||| | || | ||| || | ||| || |||||||| || || ||||||||||| Sbjct 3999436 TTGCCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 3999377 Query 16765 GGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | | || | | || |||| || ||||| ||| | || |||| ||| || || Sbjct 3999376 AGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 3999317 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | ||| || ||||| |||| ||| || | | | ||||| | |||||| Sbjct 3999316 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTC 3999257 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||| ||||| || || || || |||||||| || |||||||| Sbjct 3999256 TACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || |||||||| || || ||||||||||| | | || | | || Sbjct 3993457 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATC 3993398 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| |||||||| ||| | || |||| || || || || | ||| || ||||| Sbjct 3993397 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTC 3993338 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | |||||| | ||||| || | ||||||| Sbjct 3993337 CTGGATCTTTGC--CTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATG 3993280 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || || || || ||||| ||||||||| Sbjct 3993279 GTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATT 3993244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| || || || ||||||||||| | | ||| | | || Sbjct 3993685 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 3993626 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| |||||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 3993625 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3993566 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 |||| |||||| | | | ||||| | |||||| || | ||| ||||| Sbjct 3993565 CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGT 3993506 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || |||||||| || |||||||| Sbjct 3993505 CTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 >seq14 Length=28847931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||| | | ||| | | || Sbjct 12556714 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12556773 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || || ||||| ||||| || | || ||||| || Sbjct 12556774 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCC 12556833 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | || || | ||||||| ||||| ||||||| Sbjct 12556834 TGGATCTTGGC--CTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGG 12556891 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 | || || ||||| || || ||||| || ||||||| Sbjct 12556892 TCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATTT 12556927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404941652212570