Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 565 3e-156 seq7 96.9 4e-15 seq19 93.3 5e-14 >seq4 Length=20010643 Score = 565 bits (626), Expect = 3e-156 Identities = 1314/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| ||||||||| | || || | | |||||| || || || |||| | | ||| Sbjct 16959794 CTGGATGGATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCTCT 16959853 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | || | || ||||| || || || | || || |||||||||| ||||| Sbjct 16959854 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCT 16959913 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || || || | ||||| || || |||| || || || Sbjct 16959914 GCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 16959973 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | ||| || || | || | | | ||| Sbjct 16959974 GGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGAT 16960033 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | |||| | ||| || || | || | | Sbjct 16960034 CTTCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGG--CGTCTTCTCCCACATGTCG 16960091 Query 62398 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 | || || || || || ||| | || ||| | || || || || || || || Sbjct 16960092 TACTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCT 16960151 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 |||| || || || || ||||||| || |||| || ||||| |||||||| | | Sbjct 16960152 GCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATG 16960211 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || ||||| |||| ||||| || || | || || || |||||||| Sbjct 16960212 TTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCC 16960271 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 | || || |||||||| || || || || || | ||| || ||| ||||||| || || Sbjct 16960272 AGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGC 16960331 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | |||||| || || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 16960332 ACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACC 16960391 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62752 | |||||||| || ||| | || ||| | || ||||||| | || | Sbjct 16960392 TGTGTCAGTTTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATG 16960451 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || ||||||||||||||||| ||||| | | | || | | || || ||||| Sbjct 16960452 GACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCAC 16960511 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || || || ||||||||||| || | || || || || ||||| |||| || || || Sbjct 16960512 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 16960571 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || ||| | || ||||| ||||| |||| || || || || || | ||| | Sbjct 16960572 TTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGC 16960631 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTATACAATC 62990 | ||||||| | | || ||| ||| | || || ||||||| | | Sbjct 16960632 TGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCC 16960691 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACG 63050 ||||||| || ||||| | |||||| || ||||| ||| |||||||| | | Sbjct 16960692 --TCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTG 16960749 Query 63051 ACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 |||| || || | ||| ||| | ||||| || || ||||| ||||| | || Sbjct 16960750 ACCAGTCCTGGT--TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 16960807 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 || ||||||| | ||| || ||||| || ||||| ||||| |||||||| ||||| | Sbjct 16960808 GAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTC 16960867 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | | ||| ||||||| || |||||||| ||||| | ||||||| || ||||| || Sbjct 16960868 AAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCC 16960927 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 |||||||| | ||| | || ||||| ||||| ||||||| ||| || | | || || Sbjct 16960928 ACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTT 16960987 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 || | || |||||||| | ||| ||||| ||| ||| | || |||| | | Sbjct 16960988 TGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCAC 16961047 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || ||| || ||||| | ||||| || | ||| ||||||||||| Sbjct 16961048 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCC 16961107 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 || || || || ||| ||||| || || || ||||| |||| ||| | || | || Sbjct 16961108 TTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGT 16961167 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 16961168 TCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 16961227 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 || | || || | ||| ||||| | || || || || | || ||||| | ||| Sbjct 16961228 GGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCAT 16961287 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||||| || | || | | ||| ||| || |||| || |||||| | |||| ||| Sbjct 16961288 GTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGT 16961347 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| ||||||| || ||||||| |||||||| || ||||||| || Sbjct 16961348 CTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAGGCG 16961407 Query 63709 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAATGTTTCC 63767 || || | | || || |||| || | ||| || || || || | || | Sbjct 16961408 GTCTTTGTTCTCCAGAATTATGTCCAGAGT-CTCCTTGGAGATCATGGGGGA--GTGACG 16961464 Query 63768 CATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63825 | || | || |||||||||||| | | || |||||||||||| | || | || || Sbjct 16961465 TTTGTTCAGGGGGTTGACATAGTTGTACAGGTCTTCCATCACTTCATTGAACACCTTCTT 16961524 Query 63826 tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 || || ||||| || || || || || || | || || || |||||||| || || || Sbjct 16961525 GGTCTCCTTGTGCAGGTTGGAGACAGCGATGCGTGCAGCCAGGATGGCATAGTCGGGGTG 16961584 Query 63886 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 63945 || || || ||||| | || || || ||||| ||||||| || || || || || Sbjct 16961585 TTTGGTTGTGAGGGTGGCAGTGATCTCTGCGGCCAGTGTGTCCAGCTCAACTGTGGTCAC 16961644 Query 63946 ACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 64005 ||||| || | || ||||| |||||||| | || | ||||| | |||| Sbjct 16961645 TCCATTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGA 16961704 Query 64006 GTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 64060 ||| | |||||| || | || |||||||| |||||||| |||||||||||| Sbjct 16961705 GTTCAGGCCATAGCAGAGCTTCTGGATACGAGAGGTGATTTTGTCAAACATGACA 16961759 >seq7 Length=13814722 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || |||| || || || ||||| ||||||||||| || ||||| ||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 32803 C 32803 | Sbjct 13788557 C 13788557 >seq19 Length=17744385 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 || || | ||| || || ||||| || || || || || ||||||| || ||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 || || || ||||||| || || ||||||||| | || ||||||||| |||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || || || |||||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| || |||||||| ||||||||||| | || || || || ||||| || Sbjct 13834222 ATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 13834163 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 62916 || || || ||||| || || ||| | ||||| || ||||| |||| || || || Sbjct 13834162 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGACTCAAT 13834107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633397215582800