Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 >seq19 Length=17744385 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||||||||| || ||||||||||| | || || || ||||||| | || || ||| Sbjct 3993240 GAACAATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGC 3993299 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | ||||||||| ||| ||||| ||| ||| ||||| ||||| ||||| || | Sbjct 3993300 CAAGTGACACTATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCG 3993359 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | || ||||| |||||||| | ||||||| ||| | | || | Sbjct 3993360 ATCAGCAAAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCCCCCTCTCTGACT 3993419 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || ||||| ||||| || ||| | || || Sbjct 3993420 ACAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCT 3993456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || |||| ||| | || || ||| | | Sbjct 2910805 ATGCAGATGTTTGTTAAGACCCTGACCGGGAAGACCATAACATTGGAGGTTGAGCCAAGT 2910746 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| | || || | || |||||| ||||| || || || | || || || Sbjct 2910745 GACAGTTTCAAGAATGTAAAATCTAAAATCCAGGACAAGGAGGGAATCTCTCCAGATCAG 2910686 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| | || ||| | ||||||||||| || || | || ||||| Sbjct 2910685 CAGCGTCTCATTTTTGCTGCTAAGCAACTGGAAGATGATCGAACCCTGTGTGACTACAAC 2910626 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || ||||| |||||||| ||| | || ||| Sbjct 2910625 ATCCAGAAAGAGTCCACGCTTCATCTCGTCCTA 2910593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACC----GGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||| || ||||| ||||| | || || || |||| || | ||||| ||| | Sbjct 3998746 ATGCAGATTTTTGTGAAGACCCTCACTCACTGGCAAGACCATTACCCTTGAAGTAGAGCC 3998805 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || | ||| |||||| ||||| ||||| ||||| ||||| Sbjct 3998806 CAGTGACACCATTGAAAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 3998865 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || ||||| || || || | ||||||| ||| ||| || ||| || Sbjct 3998866 TCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTGTCCGACTA 3998925 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||||||||| ||||| ||| | || || Sbjct 3998926 CAACATCCAAAAAGAATCTACGCTTCATCTTGTCCT 3998961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || |||| || | || || ||| | | Sbjct 3993473 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3993532 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| ||||| ||||| ||||| ||||| || Sbjct 3993533 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 3993592 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| |||||||| | ||||||| ||||| | || ||||| Sbjct 3993593 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3993652 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 3993653 ATCCAGAAAGAATCCACCCTCCATCTTGTCCT 3993684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| | ||||| | || ||||| | | Sbjct 2910577 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACAATCACCCTGGAGGTGGAACCAAGT 2910518 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| |||||| || ||||||||||| || || ||||| Sbjct 2910517 GATACCATAGAGAACATTAAGGCCAAAATCCAGGATAAAGAAGGGATCCCCCCAGACCAG 2910458 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || || |||| || |||||| | || ||||| Sbjct 2910457 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGGTGGTCGCACCCTCTCTGACTACAAC 2910398 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | |||||| | | ||||| || Sbjct 2910397 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTACGATTGAGAGGGGG 2910351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| ||||| || ||| || | || ||||| |||||||| | ||| Sbjct 3995195 GACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAA 3995254 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | ||| ||| | ||| ||||| || ||||||||||| || || ||| | || || Sbjct 3995255 GACGGTCGTACTCTCTCCGACTACAACATCCAAAAAGAATCTACACTTCATCTTGTCCTG 3995314 Query 25212 AGGCTAAGAGGAGGA 25226 | || || || ||| Sbjct 3995315 CGTCTTAGGGGTGGA 3995329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433171449833045