Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 >seq19 Length=17744385 Score = 104 bits (114), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACC----GGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||| |||||||| || || | || ||||| ||||||||| | ||| || || Sbjct 3998746 ATGCAGATTTTTGTGAAGACCCTCACTCACTGGCAAGACCATTACCCTTGAAGTAGAGCC 3998805 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || | ||| | ||||| ||||| ||||| |||||| ||||| || Sbjct 3998806 CAGTGACACCATTGAAAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 3998865 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| || ||||| || | ||| || || || |||||||| | ||| || |||| || Sbjct 3998866 TCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTGTCCGACTA 3998925 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || |||||||||||||| || ||| | || ||||||| | ||||||| Sbjct 3998926 CAACATCCAAAAAGAATCTACGCTTCATCTTGTCCTGCGTCTTAGGGGTGGCA 3998978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| |||||| ||||| ||||| || ||||| || | ||| |||||||| ||||| Sbjct 3995195 GACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAA 3995254 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 || | ||| | |||| || || || ||||||||||||||||| ||| | || || Sbjct 3995255 GACGGTCGTACTCTCTCCGACTACAACATCCAAAAAGAATCTACACTTCATCTTGTCCTG 3995314 Query 111400 CGTCTGCGCGGTGG-CAATAAA 111420 ||||| | ||||| || |||| Sbjct 3995315 CGTCTTAGGGGTGGACAGTAAA 3995336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| | || ||||| ||||||||| | ||| || ||||| Sbjct 3998978 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999037 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | ||||| ||| || ||||| || ||| ||||| ||||| Sbjct 3999038 GACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3999097 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || |||||||| || | | || || || Sbjct 3999098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3999157 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||| || || || ||| | || ||||||| | ||||||| Sbjct 3999158 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTTAGGGGTGGCA 3999206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422887166620600