Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19 122 7e-23 seq14 111 1e-19 >seq19 Length=17744385 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || | || |||||||| || ||| Sbjct 3998978 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAAGTAGAGCCCAGT 3999037 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| || || ||||||||||| ||||| || ||||| Sbjct 3999038 GACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 3999097 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| |||| || |||||| Sbjct 3999098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3999157 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| |||||| | ||| | || |||| Sbjct 3999158 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCG 3999192 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || | || ||||| || || ||| Sbjct 3993473 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 3993532 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || |||||||| || ||||| || ||||| Sbjct 3993533 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 3993592 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | || ||| ||||||| |||| || |||||| Sbjct 3993593 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3993652 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 3993653 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCG 3993687 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 ||||| |||||||| || ||||| ||||| | || || ||||| |||| || || || Sbjct 2912848 TTTGTCAAGATGCAGATGTTTGTGAAAACCCTGACTGGCAAAACCATCACCCTGGAGGTT 2912789 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || ||| || || | || |||| || || || || ||||||||||| || ||| Sbjct 2912788 GAGCCCAGTGACACGATAGAGAATATAAAGTCCAAGATCCAGGACAAGGAGGGAATCCCA 2912729 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || | || || ||||| || || ||||| || ||| |||||| | ||| Sbjct 2912728 CCAGACCAGCAGAGACTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGCACTCTGTCC 2912669 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||| || || || ||||| ||||| | || | || || | ||||| Sbjct 2912668 GACTACAACATCCAGAAGGAGTCCACTTTACATCTCGTGCTCCGTCTGAGAGGAGG 2912613 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || |||| || || || |||| || || || || ||| Sbjct 2914522 GATGCAGATGTTTGTCAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 2914463 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || | | ||| || || || ||||||||||| ||||| || || || Sbjct 2914462 CGACACAATAGAGAACGTGAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCA 2914403 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || |||||||| ||||||||| | |||||| |||||| |||| || || || Sbjct 2914402 GCAGAGACTCATATTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGACTATAA 2914343 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || || |||||| | ||| | ||||| || Sbjct 2914342 CATCCAGAAGGAGTCCACCCTCCATCTTGTTTTACG 2914307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACC----GGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||| |||||||| || || | || || || || | || |||||||| || | Sbjct 3998746 ATGCAGATTTTTGTGAAGACCCTCACTCACTGGCAAGACCATTACCCTTGAAGTAGAGCC 3998805 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || | || ||||| || |||||||| || ||||| || || Sbjct 3998806 CAGTGACACCATTGAAAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 3998865 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || | || || ||||| || || ||| | || ||| || || | ||||| || Sbjct 3998866 TCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGTACTCTGTCCGACTA 3998925 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||| ||||||||||| || | ||| | || |||| Sbjct 3998926 CAACATCCAAAAAGAATCTACGCTTCATCTTGTCCTGCG 3998964 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||||||||| || |||||||| || | ||||| || || | || | || || | Sbjct 2910813 TTGTAAAGATGCAGATGTTTGTTAAGACCCTGACCGGGAAGACCATAACATTGGAGGTTG 2910754 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || | | | || | ||| ||||| || ||||||||||| || | | Sbjct 2910753 AGCCAAGTGACAGTTTCAAGAATGTAAAATCTAAAATCCAGGACAAGGAGGGAATCTCTC 2910694 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | ||||| || ||||| || ||||| | || || | || ||| | || ||| | | | Sbjct 2910693 CAGATCAGCAGCGTCTCATTTTTGCTGCTAAGCAACTGGAAGATGATCGAACCCTGTGTG 2910634 Query 22391 ATTACAACATTCAAAAAGAATCCAC 22415 | |||||||| || ||||| ||||| Sbjct 2910633 ACTACAACATCCAGAAAGAGTCCAC 2910609 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || |||||||| || ||||| || ||||| || | || || ||||| ||||||||| | Sbjct 3995192 CAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTG 3995251 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || ||||||| |||||||| ||||||||||| || | ||| | || Sbjct 3995252 GAAGACGGTCGTACTCTCTCCGACTACAACATCCAAAAAGAATCTACACTTCATCTTGTC 3995311 Query 22429 TTGCG 22433 |||| Sbjct 3995312 CTGCG 3995316 >seq14 Length=28847931 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||| ||||||||||| ||||| || || | || || || | ||||||| |||||||| Sbjct 12557616 TGTCAAGATGCAAATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACTCTGGAAGTGGA 12557557 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || |||||| | || || |||| || || || || || || ||||| || || Sbjct 12557556 GCCCCGTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGAAAAAGAAGGTATCCCCCC 12557497 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||| || ||||| || ||||| || || || | || ||| |||||| | || || Sbjct 12557496 AGATCAGCAGCGTCTGATCTTTGCTGGTAAGCAACTTGAAGATGGACGCACCCTTTCTGA 12557437 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || |||||| || | ||| | ||| | || || | ||||| Sbjct 12557436 CTACAACATCCAGAAGGAATCCCCCCTCCATCTTGTTCTCCGTCTGAGAGGAGG 12557383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419576363160295