Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq19 170 4e-37 >seq19 Length=17744385 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| |||||||| | || | ||||| |||||||| || |||||||| || || | Sbjct 2912383 TTCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2912442 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | ||||| || | |||||| || || || ||||| | || ||||| |||| Sbjct 2912443 AGAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTG 2912502 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCT 68411 | ||||| || ||||| || ||||| || || ||| ||| |||||||| |||| ||| Sbjct 2912503 GGATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC-GCTGGGTTCA 2912561 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||||||||||||| || || || ||||| || || || | ||||||| Sbjct 2912562 ACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 167 bits (184), Expect = 4e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||||| || || | || || |||||||| || ||||||||||| || || Sbjct 2914294 TCCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGA 2914353 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | ||| || || || ||||||||||| || ||||| || || Sbjct 2914354 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGG 2914413 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 |||||| |||||||| || ||||| | || ||| ||| || ||||| ||| | || | Sbjct 2914414 AATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTC-GCTGGGCTCGA 2914472 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||||||| || || || ||||||||||| || |||||||| Sbjct 2914473 CCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | || || ||||||||||| |||||||| || || ||| Sbjct 3993471 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3993412 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | |||||||| | ||| || || || || || || ||||| || ||||| ||| Sbjct 3993411 AGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGA 3993352 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||||||||| || ||| || ||||| || || || Sbjct 3993351 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACC 3993292 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTA 68471 || | ||||||||| || || ||||||||||| || || ||||||||| | || ||| Sbjct 3993291 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATTGTTCTTTTA 3993235 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | || || ||||||||||| |||||||| || || ||| Sbjct 3999204 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3999145 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || || || || ||| Sbjct 3999144 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999085 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||||||||| || ||| |||||||| | |||||| Sbjct 3999084 ATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACT 3999025 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || |||||||| ||||| || |||||||| Sbjct 3999024 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||||| | || |||| || | || || ||||||||||| |||||||| | Sbjct 3999440 TTTATTGCCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGT 3999381 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || | | |||||||| | |||||| || || || || || || || || | Sbjct 3999380 AGTCAGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 3999321 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||||||||||||||| || || || ||||| || ||| |||||||| | Sbjct 3999320 CAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGG 3999261 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| | ||| ||||| || || |||||||| |||||||| |||||||| Sbjct 3999260 GCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | || | |||| |||||||| || |||||||| || |||| Sbjct 2912611 TTCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 2912670 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| |||||||| || || || |||||||| || ||||| |||| Sbjct 2912671 ACAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTG 2912730 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| || ||||| | ||| | ||| || ||||| | || | Sbjct 2912731 GGATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAA 2912790 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| |||||||||||| || || ||||| || || || |||||||| Sbjct 2912791 CCTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | || || ||||| ||||| |||||||| || || ||| Sbjct 3993699 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 3993640 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || || || || || || ||| Sbjct 3993639 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3993580 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || ||||| || ||| |||||||| | || || Sbjct 3993579 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3993520 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || |||||||| |||||||| |||||||| Sbjct 3993519 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | || ||||| || |||||||||||||| || ||||| Sbjct 3998976 CCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGAC 3998917 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || || || || ||| Sbjct 3998916 AGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3998857 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || ||||| || || |||||||| | |||||| Sbjct 3998856 ATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACT 3998797 Query 68415 TCCAAGGTGATGGTTTTTCC----CGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || ||||||||||| || || |||||||| Sbjct 3998796 TCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| || | ||||| |||||||| || |||||||| || |||| Sbjct 2910121 TTCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2910180 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | ||||| |||| ||| || || || || ||||| | || ||||| || | Sbjct 2910181 AGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 2910240 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||| || || || || || || |||| || || ||||| | || Sbjct 2910241 GAATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCG 2910300 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||| || || || || ||||| ||||| || |||||||| Sbjct 2910301 CCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || || || || || || || || || || || |||||||||||| Sbjct 3994386 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 3994327 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || ||||| || ||| |||||||| | || || || | ||| Sbjct 3994326 TTGTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTA 3994267 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| |||||||| |||||||| Sbjct 3994266 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||| || | ||| |||| || | || || || || |||||||||||||| | Sbjct 3995336 TTTACTGTCCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGT 3995277 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||||||| || | || ||||| | ||| || || || || || || || || || | Sbjct 3995276 AGTCGGAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGAT 3995217 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTG 68371 | || ||||||||||||||||| || Sbjct 3995216 CAGGGGGAATGCCTTCCTTGTCCTG 3995192 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || |||||||||||||| |||||||| || || | || || | ||||||| | ||| Sbjct 2910603 TGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCTTCCAGTTGC 2910662 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || | || || ||||| | || || || || | || || |||||||| || || || Sbjct 2910663 TTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTGTCCTGGATTTTA 2910722 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || || || |||| || || || ||||| || ||||| || || || Sbjct 2910723 GATTTTACATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATGGTCTTCCCGGTC 2910782 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || |||||||| Sbjct 2910783 AGGGTCTTAACAAACATCTGCAT 2910805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | || || ||||||||||| |||||||| || || || Sbjct 3994227 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3994168 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || || || || || || ||| Sbjct 3994167 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3994108 Query 68355 ATGCCTTCCTTGTCTTGAAT 68374 |||||||||||||| || || Sbjct 3994107 ATGCCTTCCTTGTCCTGGAT 3994088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921280904339960