Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19 120 3e-22 seq14 86.0 5e-12 >seq19 Length=17744385 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || || || || || |||||||| || | ||| ||| ||| || || || Sbjct 2912408 ATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCAGCTG 2912467 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || ||||| ||||||||||||| ||||| || || ||||| |||||||| ||||| Sbjct 2912468 CTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCTT 2912527 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 ||| | | |||| ||||||| ||| ||| || |||| ||| | || ||||| || Sbjct 2912528 GGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGT 2912587 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||| ||||| | |||||| Sbjct 2912588 CAGGGTTTTCACAAACACCTGCAT 2912611 Score = 120 bits (132), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||||||||||||||| |||||||| ||| || ||||||| |||||| || || Sbjct 3998953 ATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTG 3998894 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || ||||| |||| || | ||| || || || ||||||||||| ||||| || || Sbjct 3998893 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3998834 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCC--- 114355 |||| | ||||| |||||| ||| || || || | ||| | || ||||| Sbjct 3998833 AGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGT 3998774 Query 114356 -GGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || || ||||||||||||||| || Sbjct 3998773 GAGTGAGGGTCTTCACAAAAATCTGCATGACT 3998742 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| | ||||| || || || || || |||||||| ||| | ||| ||| ||| Sbjct 2910137 CAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 2910196 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || ||||| ||||| ||||||||||||| ||||| ||||||||||||||||| || Sbjct 2910197 CTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATC 2910256 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || || ||| | | ||||| ||||| | | || | |||| || | || Sbjct 2910257 CTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGT 2910316 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| ||||| ||||| |||||||| Sbjct 2910317 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 ||||| | ||| | || || || || || ||||| || || | ||| || ||| Sbjct 2914310 AAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGAGTGCGGCCATCC 2914369 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || || ||||| || || | ||||| | ||| ||||| ||||||||||| || ||||| Sbjct 2914370 TCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 2914429 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||||| ||| | | || | |||||| ||| ||||| |||| ||| | || Sbjct 2914430 TGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 2914489 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || || ||||| |||||||| Sbjct 2914490 TTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||||||||| |||||||| ||| | ||||||| ||||| || ||||| ||| Sbjct 3995298 GTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCCAGCTGTTTGCCA 3995239 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || |||| || | ||| || || || ||||||||||| ||||| Sbjct 3995238 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3995195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | || || |||||| || ||||| ||| Sbjct 3993669 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 3993610 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| || || || Sbjct 3993609 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 3993550 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| || || ||| Sbjct 3993549 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTT 3993490 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 3993489 TTGACGAAGATCTGCATG 3993472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || |||| | | || | ||| | ||| || ||||| || |||||||| || Sbjct 2910576 ATACCCCCCCGTACGCGTAGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCA 2910635 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| |||||| ||||| ||| |||| | ||||||||||| || || ||| Sbjct 2910636 CACAGGGTTCGATCATCTTCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGATCTGGA 2910695 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 | || || || ||||| || || ||||| | | | |||| | | || Sbjct 2910696 GAGATTCCCTCCTTGTCCTGGATTTTAGATTTTACATTCTTGAAACTGTCACTTGGCTCA 2910755 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || |||||||| || || ||||| |||||||| Sbjct 2910756 ACCTCCAATGTTATGGTCTTCCCGGTCAGGGTCTTAACAAACATCTGCAT 2910805 >seq14 Length=28847931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || |||||||| || | || || |||||| Sbjct 12556716 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 12556775 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||||||||| |||| |||||||| ||||| || || || |||||||| || Sbjct 12556776 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTG 12556835 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||||| ||| || ||| || || |||| || | || || Sbjct 12556836 GATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTT 12556895 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||| || || ||||| || ||||| Sbjct 12556896 GCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 114189 GATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248 ||||| || || |||||||| || | || || |||||||||||| |||||||| Sbjct 12557416 GATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCA 12557475 Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308 |||| |||||||| || || || || || |||||||| || ||||| || | Sbjct 12557476 AAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTTTCCTGGATCTTGGCCTTGACA 12557535 Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368 | ||||| ||| || || || || |||| || | | ||||| ||||| || || Sbjct 12557536 TTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTC 12557595 Query 114369 ACAAAAATCTGCAT 114382 ||||| || ||||| Sbjct 12557596 ACAAAGATTTGCAT 12557609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419982616338516