Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 488 1e-132 seq19 131 3e-25 seq7 95.1 2e-14 >seq4 Length=20010643 Score = 488 bits (540), Expect = 1e-132 Identities = 987/1449 (68%), Gaps = 68/1449 (5%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||||| |||| ||||| | ||| | ||| ||||||| || | |||| Sbjct 16959801 GATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCT---CTCTCC 16959857 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || |||||| | ||| |||||||| ||||| || | ||| Sbjct 16959858 GTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCTGCGG 16959917 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || ||||||||| ||| |||||||||| ||||| || ||| Sbjct 16959918 GTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 16959977 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || |||||||| | || ||||||||||||||| || || || | |||| Sbjct 16959978 GAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATG--TTTGGAGATCT 16960035 Query 244247 AGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCAC 244303 || | ||| | ||||||||||| | | | | | ||| || | |||| Sbjct 16960036 TCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTC----------CCAC 16960085 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| |||| || | ||||||||||| || || ||||| ||| ||||| || Sbjct 16960086 ATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCC 16960145 Query 244364 TCGCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | ||| ||||||| ||||| | || ||||||||||||||||||||||||||||| Sbjct 16960146 AA-CTCTGCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGAT 16960204 Query 244423 CATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTG-----AAGGGGATGCCCATCATCATG 244477 |||| | | || | ||| |||| || |||| | ||||| ||| Sbjct 16960205 TTGGATGTTGA-GCAGCTGAGCTT----CAGGGCTTTCAAAAGGGAAACGCATCAGGATG 16960259 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||| |||| ||||| ||||| || || || || || || ||||| |||||||||||| Sbjct 16960260 AAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTT 16960319 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 || |||||||| || || ||||| ||| || | |||||| || || | | |||| Sbjct 16960320 TCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATC 16960379 Query 244598 ATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 | | || | | ||| | ||||| || || || || ||| | Sbjct 16960380 ACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATA-----AG------TCCGCTCTGGGG 16960428 Query 244658 ATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 | || || |||||| |||| | ||||| || || ||||||||||| || | | Sbjct 16960429 ----TGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCTCGTCTGTG 16960484 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 ||||||||| || || || ||||| ||||| |||||||||||||||||||||| ||| Sbjct 16960485 CTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGC 16960544 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || ||| ||| |||||||||||| |||||||||||| ||||| ||||| || | Sbjct 16960545 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTC 16960604 Query 244838 TGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC--GTCCTGCGAGCCTTGC 244895 || | | | | | || ||| || | |||||| ||| | || | || | | Sbjct 16960605 TGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCTTCA--CCCTCC 16960662 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 | || ||| || | ||||| || ||||||||| |||||| |||||| || | Sbjct 16960663 CTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGTCCAGAC 16960722 Query 244956 CGGGGCACGACGCCGGG-CACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTGC 245011 |||| ||| | | ||| |||||||| ||| || | || ||| ||||||| | Sbjct 16960723 CGGGACACT-CACTGGGACACATGAGTGACCAGTCCTGGTTGCTTTCC---ACCCTCTTC 16960778 Query 245012 ATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAG 245071 ||||| ||||| |||||||| | ||| | |||||| || | | |||||||| ||| Sbjct 16960779 ATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCTTC 16960838 Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 || ||||||||| | || |||| |||||||||||||| ||||||||||||| ||| Sbjct 16960839 CCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAA 16960898 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC-GCGTT 245190 | || | ||| || || ||||||||||| ||||| |||| | | || || | ||| Sbjct 16960899 ATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCA----CGTAGCGCGCTGTGTT 16960954 Query 245191 G---AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 | | | | ||| | ||||| | |||||| |||| |||||||| || |||||| Sbjct 16960955 GTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTA 16961014 Query 245248 GGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGAT 245307 | || || |||| | ||| | || || || | |||||||| ||||||||| Sbjct 16961015 GCTCCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGAT 16961074 Query 245308 GAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAG 245367 |||||||||| |||| | ||||| ||||| || |||||||| ||||||| || Sbjct 16961075 GAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAG 16961134 Query 245368 CAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGC 245427 ||| |||||| ||||||||||||| | | | | | |||||| || ||||| || Sbjct 16961135 CAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGC 16961194 Query 245428 GTGGGTAAA 245436 |||||| || Sbjct 16961195 GTGGGTGAA 16961203 >seq19 Length=17744385 Score = 131 bits (144), Expect = 3e-25 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 ||||||||||| || || ||||| ||||| |||| | || ||||| | | Sbjct 13834870 CCCTTGCTGACAGGAGAACCAGGATAGGTTTCGTAGGTACCGAACCTCTCTGCCAGTTCA 13834811 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || ||||||||||||||||||||||| |||||| |||||| || | | Sbjct 13834810 CAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCA-GTAACTG 13834752 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| || | || ||||| || ||| | |||||| | |||||||| ||||| | Sbjct 13834751 GGCCTTTGGGCTT-TCAAAGGGATAGCGCATGAGAATGAAGGCATCGGCCAGACCCTGGA 13834693 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 | |||||||| ||||||||||||||| ||||||| ||| Sbjct 13834692 CACCGATGCCAATGGGTCTGTGTCGCCTGTTGGACCGC 13834655 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | |||||||||||| |||||||| || || ||| ||||| |||| |||||| Sbjct 13833783 ACCCGTTTCATGAAGAGGTCTGGGATCCACAGAGCAAAGAACAGGTCTCTGGCCCTCTGT 13833724 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| |||| || || |||||||| ||||| |||||| ||| Sbjct 13833723 TCCTCTTTCCCCGTGTTCTTCTTCAGTTCTAAGAAGTCAAACACGTCAGAGTGCCACGGC 13833664 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| || ||||||| ||| || || Sbjct 13833663 TCCAGATACACAGCGAAGGCTCCAGG 13833638 Score = 105 bits (116), Expect = 1e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| ||||| ||| || ||||| ||||| |||||||| || |||||||| Sbjct 13834249 ACCTCGTCCTTACTGGTGAACTCCACGATCTCTGTGCACAGGTTACTACATTTGATGGTT 13834190 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||| ||| || ||| ||| ||||||||||||||||||||||||| |||| Sbjct 13834189 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 13834134 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | ||| ||||| ||||||| || | || ||| Sbjct 13835280 ACCTGGAACTCTCCAGAGAGAACTCTGCGGCTGTAGATGTTGCTGGTGTAGGCTTCTATG 13835221 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| ||| || |||||||| | || ||| || Sbjct 13835220 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGAGCCAGCAGTAGG 13835161 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| ||||| || Sbjct 13835160 CTGTTCCTCACACCGTGTCT 13835141 >seq7 Length=13814722 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || |||| |||||| | || || ||||| || |||||||| || ||||||| Sbjct 13788542 GGAGAGCGGGTGGTGGCCTTTGCTGCAGTGGAGGGAATTTTCTTCTCTGGTTCCTTCGCT 13788601 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||||||||||| | ||| || ||| | ||||||||| | |||||||| || || | Sbjct 13788602 GCCATCTTCTGGTTGAAGAAG--CGTGGCCTGATGCCCGGCTTGACCTTCTCCAATGAGC 13788659 Query 42814 TCATCAGCAGGGACGAGG 42831 | |||||||| || |||| Sbjct 13788660 TGATCAGCAGAGATGAGG 13788677 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||||| | || |||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 13788160 TTCATGCAGGAAGTGCAGGTGACGGAGGCACGTTGCTTCTACGGTTTTCAGATCGCCATG 13788219 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 |||||| | ||||||||| ||||| | ||| ||||||| |||||| ||| || Sbjct 13788220 GAGAACATCCACTCTGAGATGTACAGCCTCCTGATCAACACCTACATCAGGGAGCC 13788275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943989286913680