Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14 138 3e-27 seq19 134 3e-26 >seq14 Length=28847931 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | || ||||| || ||| Sbjct 12556714 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12556773 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || || ||||| || || |||||||||||||| || ||| ||||| ||||||||| Sbjct 12556774 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTG---GTCTGGGGGGATACCTTCTTTA 12556830 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || ||||| || | ||| || | || ||||| || ||||| Sbjct 12556831 TCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATG 12556890 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || || || |||||| Sbjct 12556891 GTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATT 12556926 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || |||||||| ||||| | ||| || || || || Sbjct 12557418 TTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAA 12557477 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || |||| ||||| |||||||| |||||||| || || || || Sbjct 12557478 GATCAGACGCTGCTG---ATCTGGGGGGATACCTTCTTTTTCCTGGATCTTGGCCTTGAC 12557534 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | | || ||||| || ||||| | ||| || ||||| ||||| Sbjct 12557535 ATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTT 12557594 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 12557595 CACAAAGATTTGCAT 12557609 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| || ||||| | ||| || || || || Sbjct 12557190 TTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAA 12557249 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || |||| ||||| ||||||||||||||| | || || || || Sbjct 12557250 GATCAGACGCTGCTG---ATCTGGGGGGATACCTTCTTTATCCTGGTTCTTGGCCTTGAC 12557306 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | | || ||||| || ||||| ||||| || ||| | |||| Sbjct 12557307 ATTTTCAATGGTATCACCGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCGGGTTCTT 12557366 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 12557367 CACAAAGATTTGCAT 12557381 Score = 107 bits (118), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | || |||||||| ||| Sbjct 12556942 AGAACAAGATGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCT 12557001 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | ||| || || || |||||||||||| | || ||| ||||| ||||| ||| Sbjct 12557002 TCAAGTTGCTTACCAGCAAAGATCAGACGCCGCTG---GTCTGGGGGGATACCTTCCTTA 12557058 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||| ||| || || || || ||||| || | ||| | | || ||||| || ||||| Sbjct 12557059 TCCTCGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATG 12557118 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAA 288464 | ||| || ||||| ||||| || || Sbjct 12557119 GCCTTGCCAGTCAGGGTCTTCACAAA 12557144 >seq19 Length=17744385 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | || |||||||| | ||| || || ||||| || ||||||| Sbjct 2910122 TCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2910181 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || |||| ||||| || || ||||| |||||||| || ||||| Sbjct 2910182 GAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGG---TCTGG 2910238 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||||||||||||||| ||||| | ||||| || | || || | || Sbjct 2910239 AGGAATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTC 2910298 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 2910299 CGCCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || ||||| | ||| || || ||||| || ||||| | Sbjct 2912384 TCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2912443 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || ||||| || ||||| |||||||| || ||| Sbjct 2912444 GAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 2912503 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| |||||||| || ||||||||||| || || | ||||| | ||| || Sbjct 2912504 GATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 2912563 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || ||||| || || || || | ||||||| Sbjct 2912564 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || |||| || || || || || ||| Sbjct 2910387 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAG 2910446 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| || |||||||||||||||||||| || || | | Sbjct 2910447 ATGAGACGCTGCTGG---TCTGGGGGGATCCCTTCTTTATCCTGGATTTTGGCCTTAATG 2910503 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || ||||| | ||| || | ||| || || || ||||| || || || || || ||||| Sbjct 2910504 TTCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTC 2910563 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2910564 ACGAAGATCTGCAT 2910577 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| |||||| ||||| || |||| Sbjct 3993703 CATG-CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGT 3993645 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| | ||||| || || |||||||| | ||| ||| | Sbjct 3993644 CAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAG 3993585 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||||||||| || ||||| || || || | || || | | Sbjct 3993584 GGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCT 3993525 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || ||||| || || || || |||||||| |||||||| Sbjct 3993524 CAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 123 bits (136), Expect = 6e-23 Identities = 170/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||||| ||| |||||||||||| || |||| Sbjct 3998980 CATG-CCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGT 3998922 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || || ||||| | || ||||| || |||||||| | ||| ||| | Sbjct 3998921 CGGACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAG 3998862 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||||||||| || || || ||||| || | || || | | Sbjct 3998861 GGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCT 3998802 Query 288422 CTACTTCGAGCGTGATCGTCTTCCC----GGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| || || || ||||| || || || ||||| || || |||||||| Sbjct 3998801 CTACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || ||||| | || | ||| || ||| Sbjct 3999417 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATCT 3999358 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||| | ||| ||| | || || ||||| || ||| Sbjct 3999357 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 3999298 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || || || || || | || || | |||||||| || || || ||| Sbjct 3999297 TGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 3999238 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| |||||||| Sbjct 3999237 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| |||| ||||| ||||| || ||||| || || || | ||| Sbjct 2910594 AGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCT 2910653 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | ||| || | || || || |||||||| ||| ||||| |||||| || || Sbjct 2910654 TCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGA---TCTGGAGAGATTCCCTCCTTG 2910710 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||||||||| | ||| || || | | | || || | || || || | || || Sbjct 2910711 TCCTGGATTTTAGATTTTACATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATG 2910770 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| ||||| || || |||||||| Sbjct 2910771 GTCTTCCCGGTCAGGGTCTTAACAAACATCTGCAT 2910805 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 |||||||| | || | || || ||||||| || |||||||||||| || |||||| Sbjct 3995331 TGTCCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCG 3995272 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || |||||||| | ||||| || || |||||||| | ||| ||| | Sbjct 3995271 GAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 3995212 Query 288364 GGGATTCCTTCTTTATCCTGG 288384 || || ||||| || |||||| Sbjct 3995211 GGAATGCCTTCCTTGTCCTGG 3995191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179206366152954