Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 192 7e-44 seq7 89.7 6e-13 >seq4 Length=20010643 Score = 192 bits (212), Expect = 7e-44 Identities = 935/1464 (64%), Gaps = 50/1464 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 16959921 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 16959980 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 |||||||||||||| ||||| || || ||||| | || || | || || ||| Sbjct 16959981 GCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCC 16960040 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT---CTCCCCCTGCCACATATCAAACTGG 114118 || || | ||||||| | || | ||| | | || |||||| || |||| Sbjct 16960041 TTCAGCAGGGCCCAGTCCCA---CAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGA 16960097 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC-CT-CCG 114176 ||||| || | | | |||| || || || | ||||| || ||||| |||| || | | Sbjct 16960098 AGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCC--CAACTCTGCAG 16960155 Query 114177 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 114236 ||| ||| |||| ||||| ||||| |||| || || ||||| || || | || | Sbjct 16960156 CCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGA 16960215 Query 114237 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 114296 || || || | ||||| | || || || || || | || || |||| Sbjct 16960216 GCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGAC 16960275 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 114353 | |||||||| | || ||||| | || | | | || || ||| ||| ||| || Sbjct 16960276 CCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGC---CTCGGGCA 16960332 Query 114354 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 114413 | ||||| | || | || || | | | || |||||| || || ||||| || | | Sbjct 16960333 CAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCT 16960392 Query 114414 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 114473 || || | | | ||| || | || |||| |||| ||| | || |||| Sbjct 16960393 GTGTCAGTTTGTTGAAGTCATAAGTCCG---CTCTGGGGTGACGTACATGTTGAGAGCGA 16960449 Query 114474 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 114533 | |||||||||||||| || | ||| || | |||||||| | ||||| || | Sbjct 16960450 TGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGC 16960509 Query 114534 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 114593 ||| || | ||| |||||||||| ||||| || || ||| |||| || || | Sbjct 16960510 ACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 16960569 Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 114653 | ||||| |||||||| ||||| || || || || || |||| | || || | ||| | Sbjct 16960570 CTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACA 16960629 Query 114654 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 114713 | || ||| | || | | ||| |||| ||| ||| | |||||||| Sbjct 16960630 GCTGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCT 16960689 Query 114714 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGA 114772 | || |||| || ||| | ||| || || || || | ||||| || | ||| Sbjct 16960690 CCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCA-CTGGGACACATGAGT 16960748 Query 114773 GACCATTGACCACCCTCC--TCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 ||||| | || | | || || | ||||||||| ||||| |||||||| | || Sbjct 16960749 GACCA--GTCCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGT 16960806 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCC--CCCTGATTGAGACGCAA-CTCCAAAA 114887 |||||||||| || || || | || ||| ||||| | | || |||| | Sbjct 16960807 AGAAGAGATCTCG--CGCTCTCTGC-TCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGA 16960863 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG-- 114945 |||| | || || ||||| || |||| ||| | || | | || | |||| Sbjct 16960864 AGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCC---AGGACGCT 16960920 Query 114946 ----ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGA 115001 ||| |||| | || || | ||||||| ||| | || | ||||| || | | Sbjct 16960921 TGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCA 16960980 Query 115002 TACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATG 115059 || | || | || || ||||| || | | ||| ||||| || | Sbjct 16960981 GGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGC--T 16961038 Query 115060 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 115119 | | || ||| || || || ||| |||| ||||| | ||||| | | | || || | Sbjct 16961039 AACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTC 16961098 Query 115120 GTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 ||||| || ||||| ||| |||| | || | ||||||||||| |||| || || Sbjct 16961099 ATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGG 16961158 Query 115180 CC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 115236 || ||| || || ||||||||||| || |||| ||||||| ||||| || | | || Sbjct 16961159 CCGGTTG--GTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAAC-CACTTCTCTGA 16961215 Query 115237 CATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 115296 || | | |||||| | | | ||||| || || | | ||| ||||| | || || Sbjct 16961216 CAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACAC 16961275 Query 115297 CCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACT 115356 |||||| | ||||| ||||| || || | || | || | || | ||||| Sbjct 16961276 CCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGA 16961335 Query 115357 CTTCTCCAAGGTCTTGAGACCAAA 115380 | |||||| ||||||| ||||| Sbjct 16961336 CCTCTCCAGAGTCTTGAAGCCAAA 16961359 >seq7 Length=13814722 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | ||| || ||||| |||||| || || ||||| || || ||||||| Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||||| || ||| || ||||| |||||||| ||||||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCAC 13788569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597132258090440