Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq19 125 7e-24 seq14 122 9e-23 seq4 89.7 5e-13 >seq19 Length=17744385 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | || |||||| | ||| Sbjct 3999189 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 3999130 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| || || || || Sbjct 3999129 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3999070 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||||||| ||| | || |||| || || ||||| | || | |||| Sbjct 3999069 TGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 3999010 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| || || || ||||| Sbjct 3999009 TTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | | || ||| | ||| Sbjct 3999417 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATCT 3999358 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| ||||| || || Sbjct 3999357 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 3999298 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| ||| | || |||| || || ||||| | || | |||| Sbjct 3999297 TGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 3999238 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| ||||| || ||||| Sbjct 3999237 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || ||||| | || Sbjct 2910138 AGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCC 2910197 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | ||||| ||||||||||| |||||||| |||||||| || Sbjct 2910198 TCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCC 2910257 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| | | || | ||| |||| | ||| | || | ||| | || Sbjct 2910258 TGGA-TTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGT 2910316 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| ||||| || || || ||||| Sbjct 2910317 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||| ||||||||||| |||||||| || | | || || | ||| Sbjct 3998961 AGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCT 3998902 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| |||||| || || ||||| ||||| || || Sbjct 3998901 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 3998842 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| || | || |||| || || ||||| | || | |||| Sbjct 3998841 TGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 3998782 Query 64412 TTGCCGGT 64419 ||||| || Sbjct 3998781 TTGCCAGT 3998774 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || || || || || |||||||| || | || ||||| | || Sbjct 2912399 AAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATC 2912458 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| | ||||| ||||||||||| || || || || ||||| || Sbjct 2912459 CTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTC 2912518 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| || ||| | || || | || || ||||| | || | || Sbjct 2912519 CTGGA-TCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGG 2912577 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| ||||| || || | |||||| Sbjct 2912578 TCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||| ||||| || || | || || || || || |||||||| || | | Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | |||| | |||||| || ||| | ||||| ||||||||||| || || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || ||||| ||| | ||| | ||||||| | ||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| || | || || ||||| || ||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||| |||||||| || | || || || ||||| Sbjct 3995313 AGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACCGTCT 3995254 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | || |||| |||||| || || ||||| ||||| || || Sbjct 3995253 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 3995194 Query 64352 TG 64353 || Sbjct 3995193 TG 3995192 >seq14 Length=28847931 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | | ||||| || || |||||||| || | | |||||| | ||| Sbjct 12557398 AGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCT 12557457 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || || |||||||| || || || || ||||||||||| Sbjct 12557458 TCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTTTCC 12557517 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||||| || |||||||| | ||| | || | Sbjct 12557518 TGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCC 12557577 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || |||||||| || Sbjct 12557578 TTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTT 12557612 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | |||||| | ||| Sbjct 12556714 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12556773 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || ||| | || || ||||||||||| || || || |||||||| || Sbjct 12556774 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCC 12556833 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||||| || |||||||| | ||| | |||| Sbjct 12556834 TGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTC 12556893 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 ||||| |||| || || || || |||||||||| Sbjct 12556894 TTGCCAGTCAGGGTCTTCACAAAGATTTGCATTT 12556927 >seq4 Length=20010643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 ||||||| || |||||||| | || || | || |||| | ||| ||||||| |||| Sbjct 16960452 GACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCAC 16960511 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || ||||| |||||||||||||| | ||| || || ||||||| |||||| Sbjct 16960512 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 16960571 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||| | ||||| || || || ||||| Sbjct 16960572 TTGTAGAGCATGTAGGGCGTACCGGTTTC 16960600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499459662864920