Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 156 4e-33 seq19 104 2e-17 >seq4 Length=20010643 Score = 156 bits (172), Expect = 4e-33 Identities = 939/1488 (63%), Gaps = 61/1488 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| |||||||||| ||| ||||| || ||||| | |||| Sbjct 16961368 TACAACTTCTTTGGCTTCAAGACTCTGGAGAGGTCCTACCTGCTGAAGATCAACGGCAAA 16961309 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| || || || |||| ||||| || | | || || ||| | || Sbjct 16961308 GTGGCAGAGCGTCCCCAGCACATGCTCATGCGGGTGTCTGTTGGTATCCACAAGAATGAT 16961249 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCA 93889 || ||| || | | | | | || ||| | || ||| ||| ||| Sbjct 16961248 AT--CGAC------GCCGCCATCAATACCTACAACCTGCTGTCAGAGAAGTGGTTCACCC 16961197 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTT 93947 || | || || || |||||||| || ||| |||| || ||| |||| || || Sbjct 16961196 ACGCGTCACCCACGCTCTTCAACGCAGGAACCAACCGG--CCCCAGCTGTCCAGCTGCTT 16961139 Query 93948 CCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGC 94007 |||| || | | |||| |||| |||| || || | |||| || ||| |||| || Sbjct 16961138 CCTGCTGGCCATGAAGGACGACAGCATCGAAGGCATCTATGACACGCTGAAGAACTGCGC 16961079 Query 94008 GACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGG 94067 |||||| || | || || || ||||| | || | | | | ||| || Sbjct 16961078 CCTCATCTCCAAGTCGGCCGGCGGCATCGGTGTGGCCGTTAGCTGCATCAGATCCACTGG 16961019 Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 ||||||| || ||||| || | ||| |||||||| || || ||||| | || | Sbjct 16961018 GAGCTACATCGCTGGGACCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTA 16960959 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 |||||| | |||||||||||||| |||||||| | | | || | || || | Sbjct 16960958 TAACAACACAGCGCGCTACGTGGATCAGGGTGGCAACAAGCGTCCTGGAGCCTTTGCCAT 16960899 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 || | ||||||||||| ||||| | ||| | || || |||||| || Sbjct 16960898 TTACTTGGAGCCCTGGCATTATGACGTCTTTGACTTCCTGGATCTTAAGAAGAACACAGG 16960839 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || || | |||| || |||| ||||||||||| | ||| | || ||||| || || Sbjct 16960838 GAAGGAGGAGCAGAGAGCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCAT 16960779 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 ||| | || || | ||| | |||| || | ||||||| ||| |||||||| || Sbjct 16960778 GAAGAGGGTGGAAAGCAACCAGGACTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCT 16960719 Query 94368 GTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 | ||| || || | || || || | || || | || || | | || | Sbjct 16960718 GGACGAGTGCTGGGGGGAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAG 16960659 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 || | | || || | ||| |||||||| | || | || ||| || Sbjct 16960658 GGTGAAGCGCGTGGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGA 16960599 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || |||||||||||||| | | ||| ||| | |||| ||| |||||||||| | Sbjct 16960598 AACCGGTACGCCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAA 16960539 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || |||||| || || |||||||| || || || ||||| || | || Sbjct 16960538 CCTGGGCACCATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGA 16960479 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 |||| | || || ||||| |||| |||||| || || || | || || | || Sbjct 16960478 CGAGGTGGCCGTTTGTAATCTGGCGTCCATCG--CTCTCAACAT--GTACGTCACCCCAG 16960423 Query 94668 CACGT-CTACTG-CTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGG 94723 || || || |||| | | ||| || |||| | |||| || | Sbjct 16960422 AGCGGACTTATGACTTCAA-CAAACTGACACAG---GTGACC--------AAGGTGATCG 16960375 Query 94724 TCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 || || ||||||| | | || |||| |||| ||| || || || ||||| || |||| Sbjct 16960374 TCAGAAATCTGAACAAGATCATAGACATCAACTACTATCCTGTGCCCGAGGCTGAAAACT 16960315 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| | || |||| || || || || ||||||||| | || ||||| | | Sbjct 16960314 CCAACAAGCGCCACAGGCCAATAGGAATTGGTGTCCAGGGTCTGGCAGACGCCTTCATCC 16960255 Query 94844 TGATGCGTCTGCCCTACGA---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCG 94900 |||||||| | || | || | ||| | | | || | | || | | || |||| Sbjct 16960254 TGATGCGTTTCCCTTTTGAAAGCCCTGAAG-CTCAGCTGCTC--AACATCCAAATCTTCG 16960198 Query 94901 AAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGC--CAGATCGGACGGCG 94957 | | ||| || |||| ||| | || | | | | | | |||| |||| | | Sbjct 16960197 AGACCATCTACTACGCCGCCCTAGAGGCCAGCTG-CGAGCTGGCTGCAGA------GTTG 16960145 Query 94958 GGCCAC-ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 |||| | | || ||| | || || || | ||||||| |||||| |||| | Sbjct 16960144 GGCCCCTATGAGACGTACGAAGGGTCTCCAGTCAGCAAGGGCATCCTTCAGTACGACATG 16960085 Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA--GCTCTACGCGCTGATGTTATCA 95074 |||| || |||| | | |||| ||||||| ||| | | | ||| | || Sbjct 16960084 TGGGAGAAGACGCCCACAGACCTGTGGGACTGGGCCCTGCTGAAGGAGAAGATCTC--CA 16960027 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 |||| || || | ||| ||||| |||||||||||||||| |||||||| || |||| Sbjct 16960026 AACATGGAGTCAGGAACAGTCTGCTGATGGCCCCCATGCCCACAGCCTCCACCGCCCAGA 16959967 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACA 95182 |||| |||||||||||||| |||| |||| |||| |||| | |||| Sbjct 16959966 TCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTACA 16959919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 93330 TGTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGA 93389 ||||||||| ||||| ||||| | | | | || || ||| | || ||| ||||||| Sbjct 16961759 TGTCATGTTTGACAAAATCACCTCTCGTATCCAGAAGCTCTGCTATGGCCTGAACTCTGA 16961700 Query 93390 CTTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCAC 93449 |||||||||||| | | || ||||||||| |||| ||||| | || || || || Sbjct 16961699 CTTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTCTGTACAATGGAGTGAC 16961640 Query 93450 AACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCC 93509 || || ||||| || |||||||| |||| |||| | | | || || ||||| Sbjct 16961639 CACAGTTGAGCTGGACACACTGGCCGCAGAGATCACTGCCACCCTCACAACCAAACACCC 16961580 Query 93510 GGACTACTCCATTTTGGCTGCTCGAATC 93537 ||||| |||| ||||||| || ||| Sbjct 16961579 CGACTATGCCATCCTGGCTGCACGCATC 16961552 >seq19 Length=17744385 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 95072 TCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGC 95131 ||| ||||||||||| ||| || || |||| |||||||||||||| ||||| || | Sbjct 13835139 TCAGACACGGTGTGAGGAACAGCCTACTGCTGGCTCCCATGCCCACGGCGTCCACCGCCC 13835198 Query 95132 AGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGG 95191 ||||||| |||||||||||||| | ||| ||| |||| |||| | |||| | | | | Sbjct 13835199 AGATCCTGGGCAACAACGAGTCCATAGAAGCCTACACCAGCAACATCTACAGCCGCAGAG 13835258 Query 95192 TGCTCGCCGGGGAATTCCCCGTCATCA 95218 | ||| | || || |||| |||| || Sbjct 13835259 TTCTCTCTGGAGAGTTCCAGGTCAGCA 13835285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| || ||||| ||||| |||||| | |||||| | ||| | || ||| ||| Sbjct 13833647 TTCGCTGTGTATCTGGAGCCGTGGCACTCTGACGTGTTTGACTTCTTAGAACTGAAGAAG 13833706 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| || || || |||||||||||||||| |||| ||||| ||| | |||||| Sbjct 13833707 AACACGGGGAAAGAGGAACAGAGGGCCAGAGACCTGTTCTTTGCTCTGTGGATCCCAGAC 13833766 Query 94300 CTTTTTATGAAACGCGTCGA 94319 || || |||||||| || || Sbjct 13833767 CTCTTCATGAAACGGGTGGA 13833786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494539886502280