Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 9e-15 seq8 86.0 5e-12 >seq12 Length=18396836 Score = 95.1 bits (104), Expect = 9e-15 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACAC 108522 |||||| | || |||||||| ||||||||||||||||| || |||| | ||||| ||| Sbjct 6488418 AGTGGGCGAGGGACCACAGGGTCCACCACAAGTACTCTGAAACAGACG-CGGACCCTCAC 6488360 Query 108523 AACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582 || |||| ||||||||||| ||||||||| | || ||||| | | ||| ||||| Sbjct 6488359 AATGCCACCAGGGGGTTCTTTTTCTCGCACATCGGCTGGCTGCTCGTCCGCAAACACCCC 6488300 Query 108583 GACGTGATC 108591 || || ||| Sbjct 6488299 GATGTCATC 6488291 >seq8 Length=30151083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||| | ||| ||||||||||||||||| ||||| || ||| ||||| || |||||| Sbjct 9052008 TGGGCTCGCGACCACAGGGTTCACCACAAATACTCGGAGACGGATGCCGATCCCCACAAC 9052067 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || ||||| |||| ||||| ||| | || ||| | ||| || ||| |||||||| Sbjct 9052068 GCTGTGAGGGGCTTCTTCTTCTCTCACATCGGCTGGTTGATGGTGCGCAAACACCCCGAC 9052127 Query 108586 GTGAT 108590 || || Sbjct 9052128 GTCAT 9052132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381634875389592