Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 262 4e-65 seq19 125 7e-24 seq14 95.1 1e-14 >seq4 Length=20010643 Score = 262 bits (290), Expect = 4e-65 Identities = 919/1421 (65%), Gaps = 44/1421 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | || || | ||| ||||| ||||| || || || || |||| || || Sbjct 16959927 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 16959986 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAA 153193 |||||| |||| || || | |||| | || || | || || | ||||||| Sbjct 16959987 GGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTT-TGGAGATCTTCTCCTTCAG 16960045 Query 153194 CGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | ||| |||||||| | | || ||| | ||||||||||||||| | | || Sbjct 16960046 CAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCC 16960105 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCA 153313 ||| | ||| || | |||| ||| ||| | ||||| ||||| Sbjct 16960106 CTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCA 16960165 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| ||| |||||| | ||||| | || Sbjct 16960166 GCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGC 16960225 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| ||| || | || | |||| ||| | |||||||| ||||||||||||| ||| Sbjct 16960226 TTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACC 16960285 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTATGGGATAG 153488 | || || || | || || |||| | |||||| || | |||||| Sbjct 16960286 AATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACA-----GGATAG 16960340 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 | ||| || || || ||||| || || | || | ||| || || | | | ||| Sbjct 16960341 TAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGT 16960400 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 || | ||| ||||| ||| || | | ||||| || || | || || ||||| Sbjct 16960401 TTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTAC--ATG--TTGAGAGCGATGGACGC 16960456 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| |||||| ||| || | | | |||||| |||||| || | ||| ||||| Sbjct 16960457 CAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTT 16960516 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||||| || ||| ||||| || ||||| ||||| || | ||||| ||||||||| | Sbjct 16960517 GCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 16960576 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTG 153787 ||||||||| || ||||| || |||| || | || ||| | || Sbjct 16960577 GAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTG 16960636 Query 153788 CGCTCGCACC---CGCTGCCGATAGCGGCCCTCGCT-CTCGTATCGCTCGTACAGTCGCT 153843 || |||| |||| | | | |||| || ||| || | ||| || || Sbjct 16960637 AGCCTTCACCACGCGCTTC----ACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCCT 16960692 Query 153844 CAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACC 153903 | |||| || || |||| ||| | || |||||||||| | |||||||| || |||| Sbjct 16960693 CGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACC 16960752 Query 153904 ACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGA 153963 | | || | | || | ||||||||| || || | ||| | ||||| | || Sbjct 16960753 AGTCCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGA 16960812 Query 153964 GGTCGCGCGC-CT-TGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATA 154021 | || ||||| || ||| |||||| || |||| || |||| || | | | | Sbjct 16960813 GATCTCGCGCTCTCTGC--TCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAA 16960870 Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCC 154078 || ||| |||||||| || | ||| | ||| | ||| || |||||| || || Sbjct 16960871 GACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACC 16960930 Query 154079 CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC 154138 |||||| |||| |||| | | ||||| | || | || |||||| |||||||| ||| Sbjct 16960931 CTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGA 16960990 Query 154139 GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACG-- 154196 | | ||||||||| | ||| | ||| || || | ||||||| | ||||| Sbjct 16960991 GTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATC-----TGATGCA-GCTAACGGC 16961044 Query 154197 ----CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGAT 154252 || ||||||||| | |||| || ||| ||||||| |||||| ||||| Sbjct 16961045 CACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGAT 16961104 Query 154253 GCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG 154312 ||| |||||||| ||||| | | | |||| ||| || ||| || || | Sbjct 16961105 GCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTT 16961164 Query 154313 CGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCG 154372 ||||| || ||||| ||||| |||||| || ||| || | || || | Sbjct 16961165 GGTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTT 16961224 Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||| || | ||||||| | |||||||||| ||| || || | | || |||||||| Sbjct 16961225 GTAGGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAG 16961284 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 ||||||||| ||||| || || ||| | || ||||||| Sbjct 16961285 CATGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCA 16961325 >seq19 Length=17744385 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||||| ||| | ||||| | |||||||| || |||||||||||| Sbjct 2910123 CCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2910182 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || ||||| || | | |||| |||||||| ||||| ||||| Sbjct 2910183 AGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 2910242 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| ||| | | ||| | ||||| | | |||| || Sbjct 2910243 ATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCC 2910302 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| ||||| ||||| |||||||| Sbjct 2910303 TCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||||| | |||||||| || |||||||||||| | Sbjct 2912613 CCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2912672 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | || ||||| | | |||| || | ||| ||||| || || Sbjct 2912673 AGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2912732 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || |||| | || | ||||| | | ||| ||| Sbjct 2912733 ATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACC 2912792 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| |||||||| ||||| ||||| |||||||| Sbjct 2912793 TCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || ||||| || || || || | | Sbjct 2912418 GACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCA 2912477 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || |||||||| ||| || ||| | Sbjct 2912478 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCTTGGCTTTCACG 2912537 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | || || || | || | || || |||||||| ||||| Sbjct 2912538 TTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2912597 Query 138601 ACAAAAATCTGCAT 138614 ||||| | |||||| Sbjct 2912598 ACAAACACCTGCAT 2912611 >seq14 Length=28847931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | ||| | ||| | | | |||||||| || ||||||||||| Sbjct 12556699 CCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12556758 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||| | | |||| |||||||| ||||| || || Sbjct 12556759 AGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 12556818 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || ||| || || | | ||| | ||| || | | |||||| Sbjct 12556819 ATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACT 12556878 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || ||||| || ||||| Sbjct 12556879 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496078516170960