Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 >seq19 Length=17744385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| ||||| |||||||| |||||||| ||| ||| | | | ||||| | || Sbjct 3998953 ATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTG 3998894 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | |||| | ||| || || ||||| ||||||||||| ||||| Sbjct 3998893 CTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3998834 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACC--- 15149 |||||| |||| || || || || ||||| || | ||||||||| || || Sbjct 3998833 AGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGT 3998774 Query 15150 -TGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| ||||| Sbjct 3998773 GAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| || ||| | | | ||||| | || Sbjct 3993676 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3993617 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| | ||| || || ||||| ||||||||||| ||||| Sbjct 3993616 TTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3993557 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||||||||| || || || Sbjct 3993556 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGT 3993497 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 3993496 GAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || || || || |||||||| ||| |||| | | | || || Sbjct 2910140 AACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTC 2910199 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||||||||| | || | |||||| ||||| ||||| ||||| || || Sbjct 2910200 TAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCCTG 2910259 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| ||| | | |||| || || || ||| || | || | || || || || Sbjct 2910260 GATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGTCTT 2910319 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| || ||||| Sbjct 2910320 GCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357262883540255