Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 172 5e-38 seq19 122 8e-23 >seq4 Length=20010643 Score = 172 bits (190), Expect = 5e-38 Identities = 498/753 (66%), Gaps = 20/753 (3%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| |||| || | ||| ||||| || | ||||| | | Sbjct 16959861 AGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTG 16959920 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | ||||||| ||||||||||| || || ||||| || || | Sbjct 16959921 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 16959980 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 || || |||||| |||| ||||| | ||| || || || ||| || || ||||| || Sbjct 16959981 GCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGT-TTGGAGATCTTCTC 16960039 Query 146223 CCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATG 146282 | || || ||| | ||||| | || ||||| | | | ||||||| || Sbjct 16960040 CTTCAGCAGGGCCCAGTCCCACA---GGTCTGTGGGCGTCTTCTCCCACATGTCGTACTG 16960096 Query 146283 CATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT 146339 | |||| || || | || | | ||| ||||| ||||| || || | | | Sbjct 16960097 AAGGATGCCCTTGCTGA-CTGGAGACCCTTC--GTACGTCTCATAGGGGCC--CAACTCT 16960151 Query 146340 G--GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAG 146397 | ||||| |||||||| || || || || | |||| |||||||| ||| | | Sbjct 16960152 GCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATG 16960211 Query 146398 TTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGC 146456 |||| || ||| || || ||| || | |||| | | || | |||||||| || Sbjct 16960212 TTGA-GCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGC 16960270 Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516 |||||||| | || | || | || | ||| |||||| ||| |||| | | Sbjct 16960271 CAGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGG 16960330 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 ||||||| |||| |||| ||||||||||| ||||| | |||| | || |||| Sbjct 16960331 CACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCAC 16960390 Query 146577 ACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGC 146636 | |||| | ||||| | || | | | || |||| || |||||| || Sbjct 16960391 CTGTGTCAGTTTGTTGAAGTCATAAGTCC--GCTCTGGGGT-GACGTACATGTTGAGAGC 16960447 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 ||| || |||| ||||| ||||| |||||| || | |||| ||| || || | Sbjct 16960448 GATGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGT 16960507 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 ||| |||||||||||||||||| |||||| || | ||||| || | ||||||||| Sbjct 16960508 GCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 16960567 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||| |||||||||||||| || |||||||| Sbjct 16960568 GTCTTTGTAGAGCATGTAGGGCGTACCGGTTTC 16960600 >seq19 Length=17744385 Score = 122 bits (134), Expect = 8e-23 Identities = 161/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | |||||| |||||||| || ||||| ||| || || ||| | Sbjct 3998964 CGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCA 3998905 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| |||||||| |||||| | ||||||||| || || ||||| |||||| Sbjct 3998904 TCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 3998845 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | ||| | |||||| | ||| ||||| | ||| | Sbjct 3998844 TCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATG 3998785 Query 127079 GTTTTGCCGGTCAGAG----TTTTTACAAAAATCTGCATGGCT 127117 || ||||| || || | | || ||||||||||||||| || Sbjct 3998784 GTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCATGACT 3998742 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | |||| || | ||||| || ||||| || || || ||||| ||| Sbjct 2910122 TCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2910181 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| ||||||||||| ||||| |||| | |||||||| || ||||| Sbjct 2910182 GAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 2910241 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || || ||| |||||| |||| | ||| | ||||| || ||| | Sbjct 2910242 AATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGC 2910301 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| ||||| ||||| |||||||| Sbjct 2910302 CTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || |||||||| || || ||||| || | ||||| | Sbjct 3999192 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 3999133 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 3999132 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 3999073 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| ||||| | ||| | Sbjct 3999072 TCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATG 3999013 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || ||||| ||||| ||||||||| Sbjct 3999012 GTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||||| || ||||| || || || ||||| ||| || ||||| ||| || Sbjct 2912630 CACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTC 2912689 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || ||||| |||| | || |||||| || || || || |||||||||||| Sbjct 2912690 CAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 2912749 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | || | ||||| | ||| || || | ||| | ||||| Sbjct 2912750 GATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTT 2912809 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| ||||| ||||| |||||||| Sbjct 2912810 GCCAGTCAGGGTTTTCACAAACATCTGCAT 2912839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || |||||||| || || ||||| || | | ||| | Sbjct 3993459 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCA 3993400 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| |||||| | ||||||||||| || ||||| |||||| Sbjct 3993399 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTG 3993340 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | ||||| | ||| || || | ||| | Sbjct 3993339 TCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATG 3993280 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || |||||||| |||||||| Sbjct 3993279 GTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475324609122320