Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 122 8e-23 seq19 102 7e-17 seq14 84.2 2e-11 >seq4 Length=20010643 Score = 122 bits (134), Expect = 8e-23 Identities = 550/867 (63%), Gaps = 11/867 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || || || ||| || || ||||||||||| || || | || | ||| Sbjct 16961311 AAAGTGGCAGAGCGTCCCCAGCACATGCTCATGCGGGTGTCTGTTGGTATCCACAAGAAT 16961252 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || ||||| ||| | | | || ||| | || |||| | || | ||||| |||||| Sbjct 16961251 GATATCGACGCCGCCATCAATACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCG 16961192 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| | ||| ||| || || || ||| ||| |||| || || |||| Sbjct 16961191 TCACCCACGCTCTTCAACGCAGGAACCAACCGGCCCCAGCTGTCCAGCTGCTTCCTGCTG 16961132 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || |||||||| || || | ||||| | || Sbjct 16961131 GCCATGAAGGACGACAGCATCGAAGGCATCTATGACACGCTGAAGAACTGCGCCCTCATC 16961072 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | ||||||||| || ||| ||| | | | ||| | || ||| | Sbjct 16961071 TCCAAGTCGGCCGGCGGCATCGGTGTGGCCGTTAGCTGCATCAGATCCACTGGGAGCTAC 16961012 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| | ||| |||||| | | ||| || | |||||||| |||| || || ||| Sbjct 16961011 ATCGCTGGGACCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAAC 16960952 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| || ||||| ||||| || || || | || || || | Sbjct 16960951 ACAGCGCGCTACGTGGATCAGGGTGGCAACAAGCGTCCTGGAGCCTTTGCCATTTACTTG 16960892 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TTAAAACGCAACATGGGGGCGGA 123373 || || ||||| ||| || | || || | || |||| | | |||| ||| ||| Sbjct 16960891 GAGCCCTGGCATTATGACGTCTTTGACTTCCTGGATCTTAAGAAG-AACACAGGGAAGGA 16960833 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| ||| || ||| | || ||||| | ||| | || || |||| ||| | Sbjct 16960832 GGAGCAGAGAGCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAG 16960773 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGA 123493 || || | || | ||||| |||||||||||| | ||||||||| || ||| Sbjct 16960772 GGTGGAAAGCAACCAGGACTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGA 16960713 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT 123553 | || | |||| || ||| | ||| | || ||| ||||| | ||| Sbjct 16960712 GTGCTGGGGGGAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAG---GGT 16960656 Query 123554 TAGTCA---GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | | ||| ||| | | ||| | || || || | || ||||| Sbjct 16960655 GAAGCGCGTGGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAAC 16960596 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 ||| ||||| |||||||||||||||||||||||||||||||| | ||| ||| ||| | Sbjct 16960595 CGGTACGCCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCT 16960536 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||| || || || || || || || ||| | ||||| | || |||| | | || | Sbjct 16960535 GGGCACCATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGA 16960476 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGAT 123757 |||||||| |||||| |||| || || Sbjct 16960475 GGTGGCCGTTTGTAATCTGGCGTCCAT 16960449 >seq19 Length=17744385 Score = 102 bits (112), Expect = 7e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| ||||| || |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 13834122 GAAACAGGAACTCCCTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 13834181 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| ||||||| || ||||||||||| || ||| | || || Sbjct 13834182 AACCTGGGAACCATCAAATGTAGTAACCTGTGCACAGAGAT 13834222 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| ||||| || || ||| || || | ||| || Sbjct 2910141 ACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCT 2910200 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | || | || |||||||| || ||||||||||||||||| || Sbjct 2910201 AGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCCTGG 2910260 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||||| ||| | ||||| || ||| | || ||||| | || ||| Sbjct 2910261 ATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGTCTTG 2910320 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| || |||||| Sbjct 2910321 CCAGTCAGGGTTTTGACAAAGATCTGCATC 2910350 >seq14 Length=28847931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| ||||| || || || | ||| ||| ||| Sbjct 12556717 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 12556776 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || || | |||| || |||||||| || || || ||||||||||| || Sbjct 12556777 AACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGG 12556836 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | ||| || | ||| ||||| ||||| | || ||| Sbjct 12556837 ATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTG 12556896 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| |||||||| Sbjct 12556897 CCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451835715864280