Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq22 129 8e-25 seq2 129 8e-25 >seq22 Length=21910988 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 8930 ATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAG 8989 || ||||| ||||| || |||| ||||| ||| || ||||||||||| || |||||| Sbjct 8032464 ATAGTTGCTGTTTTAACTATGTTGAAACCAGTGTCTCCTCCGAAGGTGCTTGGCTTCCAG 8032405 Query 8990 TACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC 9049 ||| |||| || |||||| || |||| || ||||||| ||| || ||||| |||| | Sbjct 8032404 TACTCCGGAGAACAGATGGGATTACCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATC 8032345 Query 9050 TCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG 9109 || | || |||||||| || |||||| | |||| ||| || | | || || | | Sbjct 8032344 TCAACCATACTCTCACCAAATATGGCATTAGAGCGCGTTTTCTCCAGCAGGACTCCGGGG 8032285 Query 9110 TAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAA 9150 |||| || | ||| || | ||| || ||||| ||||||| Sbjct 8032284 TAGAACTCCAAAGCATCAATGTCACCGTAGAGCTCTTCCAA 8032244 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 9724 ATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTG 9783 ||||| || | |||||| || |||| ||||||||| |||| || ||||| ||| Sbjct 8030188 ATGATGAGCCTAGTGGTCTGGAACAGCTGCTCGTCGTCCCAGGTGGGATGTTCTGCTTTA 8030129 Query 9784 AGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCC 9843 || | || |||| |||||| || || |||||||||| |||||||||||| | | ||| Sbjct 8030128 AGGATGTCACAGATCCTGTTATGCTCCCTCAGCCATAAGGTGGCGTACATGGTGAGACCA 8030069 Query 9844 GGCACTAAACCAAACACTTC 9863 |||| | ||||| || || Sbjct 8030068 GGCAGGATGCCAAAAACCTC 8030049 >seq2 Length=20052193 Score = 129 bits (142), Expect = 8e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||| || || ||||| | || || ||||||||||||||||||||| | Sbjct 5515900 GCTGTGTTGACGATTTCAAAGCCTACTTTTCCACCAAAGGTGCTGGGTTTCCAGTACTCT 5515959 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| || || |||| ||| || |||||||| | ||| | Sbjct 5515960 GGGGAGCAGATGGGATTCCCCATCAGTCCCTTCAGGGAGAAAGGAGCCCCTACCTCCACC 5516019 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||||| | || | |||||||| || | | ||||| ||| | Sbjct 5516020 ATGGTCTCCCCAAAGATGGAATTAGGTCTGGGTTTTTCCACAAGAAGGCCAGGGTAAAAC 5516079 Query 9116 TCGACAGCCTCGAC 9129 || ||||| ||||| Sbjct 5516080 TCTACAGCGTCGAC 5516093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723459831636200