Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq7 84.2 3e-11 >seq4 Length=20010643 Score = 185 bits (204), Expect = 1e-41 Identities = 933/1463 (64%), Gaps = 48/1463 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 16959921 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 16959980 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 |||||||||||||| ||||| || || ||||| | || || || ||| Sbjct 16959981 GCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCC 16960040 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT---CTCCCCCTCCCACATATCAAACTGG 116079 || || | ||||||| | || | ||| | | ||||||||| || |||| Sbjct 16960041 TTCAGCAGGGCCCAGTCCCA---CAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACTGA 16960097 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC-CT-CCG 116137 ||||| || | | |||| || || || | |||||||| ||||| |||| || | | Sbjct 16960098 AGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCC--CAACTCTGCAG 16960155 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 ||| ||| |||| ||||| ||||| |||| || || ||||| || || | || | Sbjct 16960156 CCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGA 16960215 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || || || | ||||| | || ||| || || || | || || |||| Sbjct 16960216 GCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGAC 16960275 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 116314 | |||||||| | || ||||| | || | | | || || ||| ||| ||| || Sbjct 16960276 CCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGC---CTCGGGCA 16960332 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | ||||| | || | || || | | | || |||||| || || ||||| || | | Sbjct 16960333 CAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCT 16960392 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 || || | | | ||| || | || |||| |||| ||| | || |||| Sbjct 16960393 GTGTCAGTTTGTTGAAGTCATAAGTCCG---CTCTGGGGTGACGTACATGTTGAGAGCGA 16960449 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 | |||||||||||||| || | ||| || | |||||||| | ||||| || | Sbjct 16960450 TGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGC 16960509 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 ||| || | ||| |||||||||| ||||| || || ||| |||| || || | Sbjct 16960510 ACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 16960569 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 | ||||||||||| || ||||| || || || || || |||| | || || | ||| | Sbjct 16960570 CTTTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACA 16960629 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | || ||| | || | | ||| |||| ||| ||| | |||||||| Sbjct 16960630 GCTGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCT 16960689 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 |||| |||| || ||| |||| ||| || || || || | ||||| | ||| Sbjct 16960690 CCTCGAACTTCTC-CCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGT 16960748 Query 116734 GACCATTGACCACCCTCC--TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 ||||| | || | | || |||| ||||||||| ||||| |||||||| | || Sbjct 16960749 GACCA--GTCCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGT 16960806 Query 116792 AGAAGAGATCCCGACAGCGAGCTTCTTCATCC--CCCTGATTGAGACGCAA-CTCCAAAA 116848 |||||||||| || || || | || ||| ||||| | | || |||| | Sbjct 16960807 AGAAGAGATCTCG--CGCTCTCTGC-TCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGA 16960863 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTGC 116902 |||| | || || ||||| || |||| ||| | || | | || |||| Sbjct 16960864 AGTCAAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTG- 16960922 Query 116903 GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 ||| |||| | || || | ||| || |||| | || | ||||| || | | Sbjct 16960923 --TTGCCACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCA 16960980 Query 116963 TACCATCAGATTGGCCATTTGTCCC-CCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || | || || ||||| ||| | | | ||| ||||| | Sbjct 16960981 GGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAG-TGGATCTGATGCAGCTA 16961039 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 | | || ||| || || || ||| |||| ||||| | ||||| | | | || || | Sbjct 16961040 ACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCA 16961099 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || ||||| ||| |||| | || | ||||||||||| |||| || ||| Sbjct 16961100 TAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGC 16961159 Query 117142 C--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 117198 | ||| || || ||||||||||| || |||| ||||||| ||||| || | | ||| Sbjct 16961160 CGGTTG--GTTCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAAC-CACTTCTCTGAC 16961216 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 | | | |||||| | | | | | | || || | | ||| ||||| | || ||| Sbjct 16961217 AGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACC 16961276 Query 117259 CGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTC 117318 ||||| | ||||| ||||| || || | || | || | || | ||||| | Sbjct 16961277 CGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGAC 16961336 Query 117319 TTCTCCAAGGTCTTGAGACCAAA 117341 |||||| ||||||| ||||| Sbjct 16961337 CTCTCCAGAGTCTTGAAGCCAAA 16961359 >seq7 Length=13814722 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | ||| || ||||| |||||| || || ||||| || || ||||||| Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||||| || ||| || || ||||||||||| || |||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCAC 13788569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613279872575880