Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 152 8e-32 seq19 107 3e-18 >seq4 Length=20010643 Score = 152 bits (168), Expect = 8e-32 Identities = 342/509 (67%), Gaps = 6/509 (1%) Strand=Plus/Plus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT-CGTCTCCTCCCCCCACATGCCCAACC 204161 ||| || || |||| ||| ||||| || || || | | ||||| | ||||| || | Sbjct 16959797 GATGGATCCATTGTGGGCGATCAG-CTGATTCTTCATTTCCTCGCTCCACAGTCCTCTCT 16959855 Query 204162 TGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTC 204221 |||| || | ||| || ||||| | |||||| || ||||| ||||| || | | Sbjct 16959856 CCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCTGC 16959915 Query 204222 GGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGG 204281 ||||| | | |||| ||||| | || |||| | |||||||||||| | ||||| |||| Sbjct 16959916 GGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGG 16959975 Query 204282 TGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCC 204341 || ||| ||||||||||| |||| ||||| ||| | || || | ||| || | Sbjct 16959976 TGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCT 16960035 Query 204342 TGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACT 204401 | |||||| || |||||| || | |||| || ||||||||||| ||| Sbjct 16960036 TCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTACT 16960095 Query 204402 GAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTG 204461 ||| |||||| | |||||||| || | ||||||| ||| || |||| | | Sbjct 16960096 GAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAG 16960155 Query 204462 CCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA 204521 |||||| ||| ||| | | |||| ||||| |||||||| ||||| || | ||| | Sbjct 16960156 CCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGA 16960215 Query 204522 --ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAA 204579 | ||| || || | | ||||| | | || || || | || |||| |||| Sbjct 16960216 GCAGCTG--AGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAG 16960273 Query 204580 GCCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||||| || || ||||| | || |||| Sbjct 16960274 ACCCTGGACACCAATTCCTATTGGCCTGT 16960302 >seq19 Length=17744385 Score = 107 bits (118), Expect = 3e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| |||||||| |||||| ||||| ||||| || Sbjct 13835984 CTTCCAGCCATAGAAGTGCATGCTGCTCAGTTTGCCGTAGTTGGGCTCGGCTATGTGGAT 13835925 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| ||||||||||| ||||||||| ||| |||| |||||||| ||||| || | | | Sbjct 13835924 GTTGAGAGACTGGCTCTGGTCGATGTAAG-CGCCGCGATCTGCTGCCATCTTCAGGACAG 13835866 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||||||||| || Sbjct 13835865 TTTTCTGGGAGATTTCCCACACCGTTTT 13835838 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| ||| || ||||| || || || | ||| || | | |||| ||||| | | || Sbjct 13835285 TGCTGACCTGGAACTCTCCAGAGAGAACTCTGCGGCTGTAGATGTTGCTGGTGTAGGCTT 13835226 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | |||||||||||| | ||||| |||||| |||||||||||||||||||| | Sbjct 13835225 CTATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGAGCCAGCA 13835166 Query 204309 GCAGGGAGTTGCGCACACCGT 204329 | ||| ||| | |||||||| Sbjct 13835165 GTAGGCTGTTCCTCACACCGT 13835145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794860565180080