Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19 158 3e-33 seq14 129 1e-24 >seq19 Length=17744385 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||| |||||||| |||| ||||||||||| | ||| Sbjct 2912391 CGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 2912450 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||| || |||||||||||||||||||| || || || Sbjct 2912451 CGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCC 2912510 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| |||||| || | |||||| | | ||| || ||||| Sbjct 2912511 TCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAG 2912570 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 ||||| ||||| || || || ||||||||||| Sbjct 2912571 GTGATGGTCTTGCCAGTCAGGGTTTTCACAAA 2912602 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| ||||||||||| | || | ||| || Sbjct 2910366 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCT 2910425 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || |||||||||||||||||||| || || |||||| ||| Sbjct 2910426 TCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATCCCTTCTTTATCC 2910485 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| | | || | ||| || ||| ||| || |||| ||||| || Sbjct 2910486 TGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTGTT 2910545 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 2910546 TTGCCAGTTAGCGTCTTCACGAAGATCTG 2910574 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| ||||| || ||||| || |||| ||||||||||| | || | Sbjct 3999196 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 3999137 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||||||||| || || ||||| || | |||||| || || ||| || || Sbjct 3999136 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTC 3999077 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| |||||| ||| || || | |||||| | | ||||| || | || Sbjct 3999076 CTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 3999017 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| ||||| ||||| || || Sbjct 3999016 AATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTG 3998981 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| || || || || || ||||||| ||||||||| | || ||| | Sbjct 3998968 AAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACG 3998909 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||||||||||| || ||||| || | |||||| || || ||| ||||| Sbjct 3998908 ACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3998849 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || || ||| || ||| | |||||| | | ||||| || | || Sbjct 3998848 CTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 3998789 Query 199591 GATCGTCTTACC----CGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || ||||||||||| || Sbjct 3998788 AATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTG 3998749 Score = 116 bits (128), Expect = 9e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || ||||| |||||||| |||| ||||||||| | | ||| | ||||| Sbjct 2910137 CAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 2910196 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || ||||| || || || |||||||||||||||||||| ||| ||| |||||| || Sbjct 2910197 CTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATC 2910256 Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| || ||| || || | ||| | ||||| | | || | |||| ||||| | Sbjct 2910257 CTGGAT-TTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAG 2910315 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || ||||| ||||| || || Sbjct 2910316 TCTTGCCAGTCAGGGTTTTGACAAAGATCTG 2910346 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| ||||| || ||||| || |||| ||||||||||| | | | Sbjct 3993463 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCG 3993404 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||||| || || || ||||| || | ||||| || || ||| ||||| Sbjct 3993403 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTC 3993344 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| |||||| |||||| || | ||||| ||| || || || | || Sbjct 3993343 CTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGT 3993284 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || ||||| || || ||||| || || Sbjct 3993283 GATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 3993248 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || ||||| || |||| ||||||||||| | | | ||||| Sbjct 3999418 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATC 3999359 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 3999358 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3999299 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| | | ||||| || | || || || Sbjct 3999298 CTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGT 3999239 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| || || || || Sbjct 3999238 CTTGCCAGTGAGGGTTTTGACGAAGATCTG 3999209 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || | ||| |||||||| |||| ||||||||| | || ||| | |||||| Sbjct 2912628 AGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCT 2912687 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || |||||||| | ||||||||| || ||||| || ||| Sbjct 2912688 TCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 2912747 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| | || | ||||| | | || || |||| ||||| || Sbjct 2912748 TGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 2912807 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||||||||| || || Sbjct 2912808 TTGCCAGTCAGGGTTTTCACAAACATCTG 2912836 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| ||||| || || || || |||| ||||||||||| | || | Sbjct 3993691 AAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 3993632 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||||| || || || ||||| || | |||||| || || ||| ||||| Sbjct 3993631 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3993572 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || || |||||| || | |||||| | | || || || | || Sbjct 3993571 CTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 3993512 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| ||||| || || || || Sbjct 3993511 AATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTG 3993476 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || ||||| || |||| |||||||||| || || | ||||| Sbjct 2910594 AGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCT 2910653 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| | || || |||||||||||||| || ||| | ||||| || ||| Sbjct 2910654 TCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTGTCC 2910713 Query 199538 TGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 || || || || || |||| || |||| ||| || || ||||| || || | Sbjct 2910714 TGGATTTTAGATTTTAC--ATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATGG 2910771 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || || ||||| || || Sbjct 2910772 TCTTCCCGGTCAGGGTCTTAACAAACATCTG 2910802 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| ||||| || ||||| || |||| ||||||||||| || || | Sbjct 3994219 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 3994160 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||||| || || || ||||| || | |||||| || || ||| ||||| Sbjct 3994159 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3994100 >seq14 Length=28847931 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||||||||||| | || | |||||| Sbjct 12556714 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12556773 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| |||||||||||||| || || |||||| ||| Sbjct 12556774 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCC 12556833 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||| | ||| || | | || || |||| ||||| ||| Sbjct 12556834 TGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTC 12556893 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| ||||| Sbjct 12556894 TTGCCAGTCAGGGTCTTCACAAAGATTTG 12556922 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| | || ||||| |||| ||||||||||| | || | ||||||| Sbjct 12557398 AGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCT 12557457 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| ||||||||||| || || || |||||| ||| Sbjct 12557458 TCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTTTCC 12557517 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||| | ||| || | || || |||| ||||| | | Sbjct 12557518 TGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCC 12557577 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| ||||| Sbjct 12557578 TTGCCAGTCAGGGTCTTCACAAAGATTTG 12557606 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || ||||| |||| ||||||||||| | || | ||||||| Sbjct 12556942 AGAACAAGATGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCT 12557001 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| |||||| ||||||| || || ||||| ||| Sbjct 12557002 TCAAGTTGCTTACCAGCAAAGATCAGACGCCGCTGGTCTGGGGGGATACCTTCCTTATCC 12557061 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 | ||||| ||| || ||| | ||| || | || || |||| ||||| | | Sbjct 12557062 TCGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCC 12557121 Query 199598 TTACCCGTGAGAGTTTTCACAAA 199620 || || || || || |||||||| Sbjct 12557122 TTGCCAGTCAGGGTCTTCACAAA 12557144 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| | || ||||| |||| ||||||||||| | || | |||||| Sbjct 12557170 AGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 12557229 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| ||||||||||| || || || |||||| ||| Sbjct 12557230 TCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTATCC 12557289 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||| ||| || ||| | ||| || | || || |||| ||||| ||| Sbjct 12557290 TGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTCCACTTCCAGAGTGATGGTC 12557349 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | | |||||||| ||||| Sbjct 12557350 TTGCCAGTCGGGTTCTTCACAAAGATTTG 12557378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178473844471081