Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq19 149 7e-31 seq14 113 5e-20 >seq19 Length=17744385 Score = 149 bits (164), Expect = 7e-31 Identities = 176/237 (74%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||| ||||| || || |||||| ||||| ||||||||||| Sbjct 2912613 CCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2912672 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || | |||||| || || || || | | ||||||||| | || Sbjct 2912673 AGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2912732 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| ||| | || | | |||||| || | || || Sbjct 2912733 ATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAACC 2912792 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 |||| |||||||||||||| ||||| ||||| ||||| || ||||| ||| ||||| Sbjct 2912793 TCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTTG-ACAAA 2912848 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||| ||||| |||||||| || |||||||| | || || Sbjct 2912402 CACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTC 2912461 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || || | ||||||||||| | || | || ||| |||||| Sbjct 2912462 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTG 2912521 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| || | || | | |||||||| | ||| || |||| |||||||| || Sbjct 2912522 GATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTT 2912581 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| ||||| ||||| ||||| | |||||| Sbjct 2912582 GCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | || ||| || ||||| |||||||| | Sbjct 3999206 TGCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 3999147 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 3999146 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 3999087 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||| | || | | ||||| || | || | Sbjct 3999086 GAATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTA 3999027 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||| ||||| || || ||||| |||||||| ||||| Sbjct 3999026 CTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||| ||||| ||||||||||| Sbjct 2910123 CCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2910182 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| ||||| || || || | ||||||||||| | || Sbjct 2910183 AGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 2910242 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| ||| || |||| | | | ||||| || | ||| | Sbjct 2910243 ATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCC 2910302 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 2910303 TCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||||| || | ||||| || ||||| | || ||| || ||||| ||||| Sbjct 3999439 TTATTGCCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTA 3999380 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || | ||| | || || ||||||||||| || || |||| | |||||| || Sbjct 3999379 GTCAGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 3999320 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| ||| || ||| | || | | ||||| || | Sbjct 3999319 AGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGG 3999260 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | || ||||| ||||| || || ||||| || ||||| ||||| Sbjct 3999259 CTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | ||| || || | || |||||| ||||| |||||||| || Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | | || | |||||| || || || || | ||||||||||| | || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| ||| || ||| | || | | || || || | |||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| |||||||| || ||||| || || ||||| ||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | |||| || |||||||| ||||||||||| Sbjct 3995328 CCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAG 3995269 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || ||||| ||||| || || |||| | |||||| || | || Sbjct 3995268 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3995209 Query 46487 ACGCTCTCCTTGTCC 46501 | || ||||||||| Sbjct 3995208 ATGCCTTCCTTGTCC 3995194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | ||| || |||||||| |||||||||| Sbjct 3998978 TGCCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGG 3998919 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || |||||||| || || || |||| | |||||| || | | Sbjct 3998918 ACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 3998859 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || ||| | | | | ||||| || | || | Sbjct 3998858 GAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTA 3998799 Query 46545 CATCCACCGTGATGGTTTTGCC----CGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||| ||||| || || || || ||||| || ||||| Sbjct 3998798 CTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 >seq14 Length=28847931 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || || ||||| | ||| | || ||||| | || |||||| ||||| |||||| Sbjct 12556693 TAGTTTCCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAG 12556752 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || ||||| | || || | ||| || || || || |||| ||||||||||| Sbjct 12556753 TCAGAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCT 12556812 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | | || || ||| |||||| ||||| | | | || || || | Sbjct 12556813 GGGGGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGC 12556872 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 ||||| |||| |||||||| ||||| ||||| || || |||||||||||||||| Sbjct 12556873 TCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATTT 12556927 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || ||||| | | ||||| ||||| |||||||| || Sbjct 12557383 CCTCCTCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557442 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| || || || |||| |||||||| || | || Sbjct 12557443 AGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557502 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| |||||| ||||| | | | || || | | ||||| Sbjct 12557503 ATACCTTCTTTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACT 12557562 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| ||||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 12557563 TCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTTG 12557613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| | || || || ||||| || || || Sbjct 12557191 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAG 12557250 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | | || || ||| | |||| ||||| | Sbjct 12557251 ATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTATCCTGGTTCTTGGCCTTGACATTT 12557310 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | | ||||| |||| |||||||| ||||| ||| | | || ||| Sbjct 12557311 TCAATGGTATCACCGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCGGGTTCTTCACA 12557370 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 12557371 AAGATTTGCAT 12557381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565028957976360