Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19 131 1e-24 seq13 98.7 8e-15 >seq19 Length=17744385 Score = 131 bits (144), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 6838411 TTCTTGTCCAAACCATAGGCAATGGCAGCTGCAGTGGGCTCATTAATAATTCTCAATACA 6838470 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| |||| || ||||| || ||||| | ||| || || || || ||| Sbjct 6838471 TTAAGGCCAGAGATTGTTCCAGCGTCTTTGGTTGCTTGGCGTTGAGAGTCATTGAAGTAT 6838530 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||||||||| || ||||||| Sbjct 6838531 GCAGGAACAGTGATGACGGCAT 6838552 Score = 105 bits (116), Expect = 5e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | |||| ||||||||||||||||||| Sbjct 6848522 CAAAGACTGTGTTGGTGGGGTTCATAGCAACCTGATTCTTGGCTGCATCTCCAATCAACC 6848463 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | |||||| || ||||| | || || || || || |||| Sbjct 6848462 TTTCTGAGTCTGTGAAAGCAACATAACTGGGTGTTGTCCTGTTGCCCTGGTCGTTGGCAA 6848403 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || ||||||| ||||| | || || || | ||||| Sbjct 6848402 TGATTTCAACTTTGCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCAAGATCAA 6848343 Query 518703 TACCAA 518708 |||||| Sbjct 6848342 TACCAA 6848337 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| |||||||||||| ||||||||||| || | ||| ||| Sbjct 6849263 TTTTTGTCCAAACCATAGGCAATAGCAGCAGCAGTGGGTTCATTAATGATACGCAAGACA 6849204 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| || | || |||| ||||| |||||||| || | || || || || || || Sbjct 6849203 TTAAGGCCTGAGATAGTTCCAGCATCCTTAGTGGCCTGACGCTGAGAGTCATTGAAGTAA 6849144 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || || || |||| Sbjct 6849143 GCTGGCACTGTGATGACTGCAT 6849122 Score = 102 bits (112), Expect = 6e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 518526 AAATA--GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||||| || ||||| ||||| |||||| | |||| |||||||||||||||||||| Sbjct 6839035 AAATACTGTGTTGGTGGGATTCATTGCAACCTGATTCTTGGCTGCATCTCCAATCAGCCT 6839094 Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 ||||| || || || | || || || || || | || || || ||||| ||||| Sbjct 6839095 CTCTGTGTCAGTGAAGGCCACGTAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAAT 6839154 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703 ||||||||||| |||| || ||||||| ||||| | || || || | |||||| Sbjct 6839155 GATTTCAACTTTGCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCGAGATCAAT 6839214 Query 518704 ACC 518706 ||| Sbjct 6839215 ACC 6839217 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||||| |||| ||||| | ||| ||||||||||| | ||||||||| |||||||| Sbjct 6837177 TTGTCAGCAGCAGAGACATTCATAATGCCATTGGCATCAATATCAAATGTCACTTCAATC 6837236 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | ||||||| ||||| || || | |||| | |||| ||| Sbjct 6837237 TGAGGAACACCACGGGGAGCAGGGGGGATGCCCGTCAGCTCAAATTTACCCAACAAATTG 6837296 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCG 517399 || ||||| || | | |||||||||||| Sbjct 6837297 TTGTCTTTGGTCATTGCACGTTCACCCTCG 6837326 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||||| |||| ||||| | ||| ||||||||||| | ||||||||| |||||||| Sbjct 6850471 TTGTCAGCAGCAGAGACATTCATAATGCCATTGGCATCAATATCAAATGTCACTTCAATC 6850412 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | ||||||| ||||| || || | |||| | |||| ||| Sbjct 6850411 TGAGGAACACCACGGGGAGCAGGGGGGATGCCCGTCAGCTCAAATTTACCCAACAAATTG 6850352 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCG 517399 || ||||| || | | |||||||||||| Sbjct 6850351 TTGTCTTTGGTCATTGCACGTTCACCCTCG 6850322 >seq13 Length=21921923 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || || || |||| || |||||||| || ||||| || || | | || | Sbjct 10464531 TTTTTGTCCAGGCCGTAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGGAGAATA 10464472 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| ||| ||| |||| ||||||||||| || || | || || || || ||||| Sbjct 10464471 TTAAGTCCACTAATGGTTCCAGCATCTTTAGTTGCCTGGCGCTGGGAGTCATTGAAATAG 10464412 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||||||||| ||||| |||| Sbjct 10464411 GCAGGAACAGTGATAACTGCAT 10464390 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| ||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 10465722 CACATTCAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACTCCTCT 10465663 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 ||||||| || || || || | ||| | |||||| |||||||||| || || | Sbjct 10465662 GGGAGCAGGAGGAATTCCCGTCAGCTCAAACTTGCCCAGAATATTATTATCCTTTGTCAT 10465603 Query 517384 TTTTCGTTCACCCTC 517398 || |||||||| Sbjct 10465602 GGCTCTCTCACCCTC 10465588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779351416695958