Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq17 232 8e-56 seq13 159 4e-34 seq4 86.0 8e-12 >seq17 Length=16464107 Score = 232 bits (256), Expect = 8e-56 Identities = 810/1248 (65%), Gaps = 20/1248 (2%) Strand=Plus/Plus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 || ||| ||| |||||||| || || || |||||| | |||||||||||||| | Sbjct 13383194 TCCTCAGCTTGGTACTTTTCAGCCTCCTGCACCATCCTGTCAATGTCTTCTTTGCTCAGC 13383253 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGC 6690 | ||||| || || || || || ||||| ||| | ||| |||| | ||| || | || Sbjct 13383254 CGGCCCTTGTCGTTGGTGATGGTTATCTTGTTCTG-TTTGCCCGTGCTCTTGTCCACGGC 13383312 Query 6691 ACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACC 6750 | || |||| ||| || || || || ||||| ||| | || | || || || ||| Sbjct 13383313 AGACACGTTCAGAATGCCGTTGGCGTCCACATCAAACGTGACCTCGATCTGCGGA--ACC 13383370 Query 6751 CCTCG--GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 ||||| | || | ||||| |||| | ||||| | || || | |||| ||| | Sbjct 13383371 CCTCGTGGAGCAGGCGGAATTCCCGAGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCTTG 13383430 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | || || || ||||| || | || ||| | || || || || | | Sbjct 13383431 GTCATGGCCCGCTCTCCCTCATACACCTGGATCAAAACCCCCGGCTGGTTGTCA-GCGTA 13383489 Query 6869 GTTGA-GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 | || ||| | || || || | || || || || || | ||| | | || Sbjct 13383490 GGTGCTGAACACCTGCGTTTGTTTTGTGGGGATGGTGGTGTTGCGTTTAATCAGTGATGT 13383549 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | |||||| || |||| || | |||||||| | ||||||| || | || Sbjct 13383550 CATTACTCCACCCGCTGTCTCGATACCCAAGGACAGAGGCGCTACGTCCAGCAGCAGTAG 13383609 Query 6988 GTCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| ||||| || | | || || || | | ||||| ||||| | || || Sbjct 13383610 GTCCTGAAC---TTTGCTGGAGGTGTCTCCTGTGAGAACTGCGGCCTGGACGGCTGCACC 13383666 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 ||| || ||||| ||||| ||||| || | || ||||| || | |||||||| | || Sbjct 13383667 GTACGCCACCGCTTCATCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCGTTAAAGAAGTC 13383726 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | | | || ||||| ||||| | || || || || ||||| || | || | Sbjct 13383727 TTGCAGGAGCTTCTGGATTTTTGGGATCCTGGTGGAGCCTCCCACCAAGACCACATCGTG 13383786 Query 7165 CA-CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | || || ||| || ||||| | ||| | || | |||||| |||||||||| | | Sbjct 13383787 AATCTGTCC-TTTGTCCATCTTGGCGTCCCTCAGGGCTTTTTCCACAGGTTCCAGAGTTC 13383845 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | ||||| ||| ||||| || ||||| || || | ||| ||||| || ||||| | Sbjct 13383846 CCCTGAACAGGTCTGAGCACAGCTCTTCAAAGCGAGCTCTGGTGATGGACGTGTAGAAGT 13383905 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 | | ||| ||| | | || || || || ||| || || | | || || ||||| | Sbjct 13383906 CGATGCCCTCGAAGAGTGAGTCGATCTCGATGCCTGCCTGGGAGCTGGAGGACAACGTCC 13383965 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||| || | ||||| | || || | | | || || | | | | | |||| Sbjct 13383966 TCTTGGCCCTTTCACAAACTGTACGCAGCCTCCTCAGTGCTCTCTTGCTCTGGCTGATAT 13384025 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| | ||||| | |||||||| || ||||| | | | || || | Sbjct 13384026 CCTTCCTGTGTTTCCTCTTAAACTCCTCGACAAAGTGGGTGACCATGCGATTGTCAAAGT 13384085 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || ||||| | ||| || || || || || ||||| || ||||||| || || |||| Sbjct 13384086 CCTCTCCACCGAGGTGAGTGTCGCCAGCTGTGGCTTTCACCTCAAAGACGCCGCCATCAA 13384145 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTA 7582 | | || | || |||||||| || || |||||||| |||||||| || ||||| || Sbjct 13384146 TTGTCAAAATGGACACATCAAATGTTCCTCCACCCAGATCAAAAATCAGGACGTTGCGCT 13384205 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 | |||| | | ||| || | ||| || ||||| || || || || || ||||| || Sbjct 13384206 CCCCCGTCCT-GCACTTGTCCAAACCATATGCGATGGCAGCTGCTGTGGGCTCATTGATG 13384264 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || | || |||||| || || || | || || |||||||| || ||||| || Sbjct 13384265 ATCCTCAGGACGTTCAGCCCGGCTATGACACCTGCGTCCTTCGTCGCCTGCCGTTGGGAG 13384324 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||||||||| || | ||| || | | ||||| | ||| || || | Sbjct 13384325 TCGTTGAAGTAGGCCGGGACGGTGATGACAGCATTGGACACTTTATGACCCAGGTATGCC 13384384 Query 7763 TCCGCGATATCTTTCA-TTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | || || | ||| ||| ||||| || |||||||| || Sbjct 13384385 TCTGCCGTTTCCTTGAGCTTTACCAAG-ACCATGGAGGAAATCTCCTC 13384431 >seq13 Length=21921923 Score = 159 bits (176), Expect = 4e-34 Identities = 361/541 (67%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || |||||||| ||||| || | ||||| || || || || || Sbjct 10465162 GCACCGTAGGCCACAGCCTCATCTGGGTTGATGCTCTTATTGAGATCACGGCCATTGAAG 10465103 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | |||||| |||||||| ||||| || |||||||| | ||||| Sbjct 10465102 AAGTCCTGCAGCAGCTTTTGAATCTTCGGGATACGTGTGGAGCCACCGACGAGGACGATG 10465043 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || ||||| | || | || | || || ||||| || | Sbjct 10465042 TCGTGTATCTGGCTTTTGTCCATCTTGGCATCCCTCAGGGCCTTCTCCACAGGCTCAAGG 10464983 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | |||||| | ||| | || || |||||||| || | ||| || || || ||| Sbjct 10464982 GTTCCACGGAAGAGGTCTGCATTTAGCTCTTCAAAACGGGCCCTGGTGATAGAAGTGTAG 10464923 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATA 7337 ||||| || ||| | | ||||| || || ||| | | || ||| | | ||| Sbjct 10464922 AAATCTGTTCCTTCGAACAGTGAATCGATCTCGATGCTGGCCTGGGTGCTGCTGGAGAGG 10464863 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || |||||||||||||| || | |||||||| ||| ||| ||| | Sbjct 10464862 --GTACGCTTAGCACGCTCACACGCCGTGCGCAGACGACGAACGGCTCGCTTGTTGTTGT 10464805 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 || || || || || || || ||||| || ||||| || | | | Sbjct 10464804 TGATCTCCTTTTTGAACTTGCGCTTGAACTCGGCAATAAAGTGGTTAACCATGCGGTTGT 10464745 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | || || |||||||||||||| || || || || || | ||||| |||||||| || Sbjct 10464744 CAAAGTCCTCACCACCCAAGTGGGTGTCTCCGGCTGTTGACTTGACCTCAAAGATGCCAT 10464685 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 ||||||| | | | || |||||||| |||||||| || |||||||| ||||| || | Sbjct 10464684 CTTCAATAGTCAGGATTGACACATCAAAAGTACCACCTCCAAGGTCAAAGATGAGGACAT 10464625 Query 7578 T 7578 | Sbjct 10464624 T 10464624 >seq4 Length=20010643 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || |||||||| ||||| || || || || || || || || |||||||| | Sbjct 14416459 TTTTTGTCCAGACCGTAGGCGATGGCAGCAGCAGTCGGCTCGTTGATGATACGAAGCACG 14416518 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | || ||||| || || || || ||||| || ||||||||| Sbjct 14416519 TTGAGTCCGGCAATCACGCCGGCGTCTTTGGTGGCCTGACGCTGCGAGTCATTAAAGTAG 14416578 Query 7715 GCCGGGACCGTTACGACCGCGT 7736 || || || ||||| || |||| Sbjct 14416579 GCGGGAACAGTTACCACGGCGT 14416600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634897459480120