Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq18 84.2 3e-11 >seq4 Length=20010643 Score = 185 bits (204), Expect = 1e-41 Identities = 957/1498 (64%), Gaps = 48/1498 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| |||||||||| | | |||||||| | | ||||| || | | Sbjct 16961296 CCCCAGCACATGCTCATGCGGGTGTCTGTTGGTATCCACAAGAATGATATCGACGCCGCC 16961237 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | | || ||| || | |||| | || ||||| |||||| |||| || ||||| Sbjct 16961236 ATCAATACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCGTCACCCACGCTCTT 16961178 Query 111731 CAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||| || || ||| | ||||| ||||||| || ||||| | || | ||||| Sbjct 16961177 CAACGCAGGAAC--CAACCGGCCCCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGAC 16961120 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | ||||| || | ||| || | | || |||| ||||| |||| ||| Sbjct 16961119 GACAGCATCGAAGGCATCTATGACACGCTGAAGAACTGCGCCCTCATCTCCAAGTCGGCC 16961060 Query 111849 GGTGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 || || ||||| || | | | || ||||| ||| | || || | Sbjct 16961059 GGCGGCATCGGTGTGGCCGTTA--GCTGCATCAGATCCACTGGGAGCTACATCGCTGGGA 16961002 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || | ||| | || | | || ||||| | || | |||| ||||||||||| Sbjct 16961001 CCAACGGAAACTCAAACGGCCTGGTGCCCATGCTGAGAGTGTATAACAACACAGCGCGCT 16960942 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || | || | ||| ||||| ||| | | || | || | ||||| | Sbjct 16960941 ACGTGGATCAGGGTGGCAACAAGCGTCCT---GGAGCCTTTGCCATTTACTTGGAGCCCT 16960885 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 |||| || || | || ||||| || | ||| ||| | |||||| | Sbjct 16960884 GGCATTATGACGTCTTTGACTTCCTGGATCTTAAGAAGAACACAGGGAAGGAGGAGCAGA 16960825 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA-- 112138 | || |||||||||| ||| | ||||| || || || ||||||||||| || || Sbjct 16960824 GAGCGCGAGATCTCTTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGGGTGGAAA 16960765 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCG 112197 | | || | ||||| ||| | ||||| || |||||||| ||| ||| | Sbjct 16960764 GCAACCAGG--ACTGGTCACTCATGTGTCCCAGTGAGTGTCCCGGTCTGGACGAGTGCTG 16960707 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACT-GCG 112256 ||| ||| |||| || | |||||||| | ||| ||| | ||| | ||| || ||| Sbjct 16960706 GGGG-GAGAAGTTCGAGGAGCTCTACACTAGGTATGAGAAGGAAGGGAGGGTGAAGCGCG 16960648 Query 112257 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 |||| ||| | ||||| | || || | |||| || || || || ||||| Sbjct 16960647 T-GGTGAAGGCTCAACAGCTGTGGCACGCCATAATTGAGTCGCAGACAGAAACCGGTACG 16960589 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || || ||||| |||||||||||||| ||| ||||| || || |||| |||| Sbjct 16960588 CCCTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACC 16960529 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 |||||| | |||||| || ||||||||| |||| | || || ||| ||| ||| Sbjct 16960528 ATCAAGTGCAGCAACCTGTGCACAGAAATCGTGGAGTACACCAGCACAGACGAGGTGGCC 16960469 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || ||||| || || || ||||||||| || ||| || |||||| ||| | | Sbjct 16960468 GTTTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCAGAG---CGGACTTAT 16960412 Query 112497 GATTATGAAAAACT-CCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | ||||| ||| | || || || || | ||| || |||| | || Sbjct 16960411 GACTTCAACAAACTGACAC-AGGTGACCAAGGTGATCGTCAGAAATCTGAACAAGATCAT 16960353 Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 || | || | || || || ||| ||| || || || | | | ||| | || Sbjct 16960352 AGACATCAACTACTATCCTGTGCCCGAG---GCTGAAAACTCCAACAAGCGCCACAGGCC 16960296 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 ||| || | |||||||| ||||| || || | ||||| || || | | ||||| Sbjct 16960295 AATAGGAATTGGTGTCCAGGGTCTGGCAGACGCCTTCATCCTGATGCGTTTCCCTTTTGA 16960236 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 | ||||| || |||| | || || ||||| || || ||||||| || Sbjct 16960235 AAGCCCTGAAGCTCAGCTGCTCAACATCCAAATCTTCGAGACCATCTACTACGCCGCCCT 16960176 Query 112733 TGAGGCGAGTTCGGAGTTGGCAG-AG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 ||||| || | ||| |||| | || |||| || || ||||| || | || || ||| Sbjct 16960175 AGAGGCCAGCTGCGAGCTGGCTGCAGAGTTG--GGCCCCTATGAGACGTACGAAGGGTCT 16960118 Query 112791 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCAC 112847 |||| ||| |||||| | ||||| | || ||||||| || || | ||| | Sbjct 16960117 CCAG--TCAGCAAGGGCATCCTTCAGTACGACATGTGGG-AGAAGACGCCCACAGACCTG 16960061 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | ||||||| | || ||||| ||| | | || | | |||||||| || Sbjct 16960060 TGGGACTGGGCCCTGCTGAAGGAGAAGATCTCCAAACATGGAGTCAGGAACAGTCTGCTG 16960001 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 ||||| || ||||| |||||||||||||| || ||| |||| || || || | | | || Sbjct 16960000 ATGGCCCCCATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 16959941 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 |||||||| | |||||||| | ||| || | |||||||| ||| || ||| Sbjct 16959940 CCCTACACCAGCAACATCTACACCCGCAGAGTTCTGTCTGGAGAGTTCCAGATCGTGAAC 16959881 Query 113028 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 113085 ||||| | | ||||| | |||| || || ||| | |||| |||||| ||| Sbjct 16959880 CCTCATCTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAAATGAAGAATC 16959823 >seq18 Length=15207555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 ||||||| | | || ||||| ||| ||||| ||||| ||||||||||| ||| || Sbjct 10925685 TGAGCGAATTGTGGCCTTTGCTGCTGTGGAGGGAATCTTTTTCTCTGGTTCATTCGCTGC 10925744 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || || |||||||||||| |||| || ||||| || || || ||| || ||||| || Sbjct 10925745 CATCTACTGGCTCAAGAAGAGAGGCCTAATGCCTGGGCTTACCTACTCTAATGAGCTGAT 10925804 Query 102299 C 102299 | Sbjct 10925805 C 10925805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620512391662960