Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 seq19 98.7 1e-15 >seq4 Length=20010643 Score = 217 bits (240), Expect = 2e-51 Identities = 962/1497 (64%), Gaps = 46/1497 (3%) Strand=Plus/Plus Query 105837 GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGT 105896 ||| |||||| |||| | ||| || || ||| | | || || |||| ||||| || Sbjct 16959823 GATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGT 16959882 Query 105897 TGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTT 105956 | || ||| |||||||| | || ||| | |||||||| | |||||||| | Sbjct 16959883 TCACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCT 16959942 Query 105957 CAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA 106016 | | | | || || || |||| ||| || |||||||||||||| ||||| || ||||||| Sbjct 16959943 CGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCA 16960002 Query 106017 AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA-- 106074 |||||||| | | || | || ||| ||||| || | ||||||| | Sbjct 16960003 GCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACA 16960062 Query 106075 GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGA 106132 | | | | || || || ||||||| || | ||||| | |||||| ||| ||| Sbjct 16960063 GGTCTG-TGGGCGTCTTCT-CCCACATGTCGTACTGAAGGATGCCCTTGCTGACT--GGA 16960118 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 106192 || || || | |||||||||| || || |||||| || ||||| ||||| ||| Sbjct 16960119 GACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGG 16960178 Query 106193 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 106252 | |||| || ||||| || ||||| | || | | || |||||| ||| Sbjct 16960179 GCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCA 16960238 Query 106253 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 106312 || | | | || || || || | || || ||||| || ||||| | || || || Sbjct 16960239 AAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGC 16960298 Query 106313 CTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATG 106369 ||||| ||| | || || ||| ||| ||| || ||||| | || |||| ||| Sbjct 16960299 CTGTGGCGCTTGTTGGAGTTTT---CAGCCTCGGGCACAGGATAGTAGTTGATGTCTATG 16960355 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 | ||| |||||| || | | ||| || | | ||||| | | ||| || Sbjct 16960356 ATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAA 16960415 Query 106430 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 106489 || || |||| |||| ||| | || ||||| || |||| ||| ||||| ||| Sbjct 16960416 GTCCG---CTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCC 16960472 Query 106490 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTC 106549 ||| || | |||||||| | |||||||| |||| |||| | ||| || || Sbjct 16960473 ACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTG 16960532 Query 106550 CCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 106609 |||| |||| ||||| ||||| ||||||| || || |||||||||||||||||||| Sbjct 16960533 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTA 16960592 Query 106610 CCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCG 106669 || || || ||||| |||| | || || | ||||| | || || | | Sbjct 16960593 CCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGC 16960652 Query 106670 TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC- 106728 || ||| || ||| ||| ||| | |||||||| | || |||| ||| ||| | || Sbjct 16960653 TTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTC-CCCCCAGCA 16960711 Query 106729 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCC--TCA 106786 ||| ||||| || || ||||| | || ||||| | || | | || Sbjct 16960712 CTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACCA--GTCCTGGTTGCTTTCC 16960769 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 106846 |||| ||||||||| ||||| || ||||||| || | |||||||||| | | Sbjct 16960770 ACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGC 16960829 Query 106847 TCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGG 106905 || || | ||| ||| || ||| || ||||| || | || || ||||| || Sbjct 16960830 TCCTCCTTCCCTGTGTT-CTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGG 16960888 Query 106906 CTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCG 106959 ||| | || | || | | ||| ||||| ||| | |||| || ||||| Sbjct 16960889 CTCCAAGTAAATGGCAAAGGCTCC---AGGACGCTTGTTGCCACCCTGATCCACGTAGCG 16960945 Query 106960 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 107019 ||||||| |||| | || | ||||| || | | || | ||| | || || ||||| Sbjct 16960946 CGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCC 16961005 Query 107020 CCGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGC 107076 || || | | ||| ||| | || | | | || || || || || || Sbjct 16961006 AGCGAT-GTAGCTCCCAGTGGATCTGATGCAGC--TAACGGCCACACCGATGCCGCCGGC 16961062 Query 107077 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 107136 | |||| ||||| | || || | | | || || ||||||| || | ||| ||| || Sbjct 16961063 CGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTC 16961122 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 107194 ||| |||| | |||||||| ||||||| ||| || | ||| || || || |||||| Sbjct 16961123 CTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTG--GTTCCTGCGTTGAAG 16961180 Query 107195 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || |||| ||||| ||||| || | | |||| | || ||| || | | | | Sbjct 16961181 AGCGTGGGTGACGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTATTGATGGC 16961239 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | || || || | | |||||| || | | ||| ||||| | ||||| ||||| Sbjct 16961240 GGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCATGTGCTGGGG 16961296 >seq19 Length=17744385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| |||||| ||| |||| | || ||||| |||| ||| || || || || || Sbjct 13834247 CTCGTCCTTACTGGTGAACTCCACGATCTCTGTGCACAGGTTACTACATTTGATGGTTCC 13834188 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||||||| || |||||||||||||||||||| || || Sbjct 13834187 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCC 13834128 Query 106612 CGTCTCCGTCTGTGACT 106628 || || |||||||||| Sbjct 13834127 TGTTTCTGTCTGTGACT 13834111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589762189989320