Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq19 145 2e-29 >seq19 Length=17744385 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || ||||| || | ||||| | ||||| || Sbjct 2912403 ACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCC 2912462 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || ||||| |||||||| || Sbjct 2912463 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGG 2912522 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||||||||||||||| ||| ||||| | ||| | ||||| Sbjct 2912523 ATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTTG 2912582 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||||| || ||||| |||||| Sbjct 2912583 CCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | ||| | | |||||||| Sbjct 3999414 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATCTTCC 3999355 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3999354 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 3999295 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || ||||||||||||| ||| Sbjct 3999294 ATTTTGGCCTTTACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTAATGGTC 3999238 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 3999237 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 132 bits (146), Expect = 1e-25 Identities = 143/188 (76%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || |||||||| || ||||| |||| ||||| | |||||||| Sbjct 3998958 ACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCC 3998899 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3998898 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 3998839 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || || ||||||||||| ||| || ||||||||||||| ||| Sbjct 3998838 ATTTTAGCCTTTACATTTTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTAATGGTC 3998782 Query 195109 TTTCCTGT 195116 || || || Sbjct 3998781 TTGCCAGT 3998774 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 3999186 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 3999127 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || |||||||| || ||||| || Sbjct 3999126 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 3999067 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || |||||||||||||| ||| || ||||||||||||| ||| Sbjct 3999066 ATCTTTGCCTTTACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTAATGGTC 3999010 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| || || | ||||| Sbjct 3999009 TTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | || ||| || || ||||||||||| || || || ||||| |||| ||||| Sbjct 2910129 CTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 2910188 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| || || || ||||| || || || |||||||||||||||||| Sbjct 2910189 CGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCT 2910248 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 ||||| || || ||||| |||| || ||||| ||||| | ||| | || || Sbjct 2910249 TCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGA 2910308 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| ||||| || || | ||||| Sbjct 2910309 GTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| ||||| || || ||||| || | || || | |||||||| Sbjct 3993681 ACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 3993622 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3993621 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 3993562 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || |||||||||| ||| Sbjct 3993561 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTAATGGTC 3993505 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 3993504 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 123 bits (136), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | || | | |||||||| Sbjct 3993453 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCC 3993394 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | ||| || || || ||||||||||| ||||| || Sbjct 3993393 AGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 3993334 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || |||||||| ||||| |||| || || |||||||| | ||| Sbjct 3993333 ATCTTTGCCTTCACATTCTCAATAGTGTC---ACTTGGCTCAACCTCAAGGGTGATGGTC 3993277 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | || ||||| || | |||||| Sbjct 3993276 TTGCCAGTGAGGGTCTTTACAAAGATCTGCATT 3993244 Score = 116 bits (128), Expect = 8e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | |||||||| || || |||||||| || || || || || || | ||||| Sbjct 2914300 TCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGAGT 2914359 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||| || ||||| || || |||| || ||||||||||||||||| Sbjct 2914360 GCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGAATGCC 2914419 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || || |||||||| || ||||| || || || || Sbjct 2914420 CTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGACCTCCAG 2914479 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || || | || || || |||| ||||| Sbjct 2914480 GGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 107 bits (118), Expect = 4e-18 Identities = 121/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || ||||| || | || || || || ||||||||||| Sbjct 3994386 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 3994327 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| ||||| ||| || |||||||||||||| ||| || || |||||| Sbjct 3994326 TTGTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGG 3994270 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| ||||| | ||||| Sbjct 3994269 GTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || |||||||| || ||||| |||| ||||| | || ||||| Sbjct 3995310 ACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCC 3995251 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3995250 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 3995192 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 3994209 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 3994150 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3994149 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 3994090 Query 195052 AT 195053 || Sbjct 3994089 AT 3994088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109060217848181