Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq19 120 2e-22 seq14 102 5e-17 >seq19 Length=17744385 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || | || |||| ||||||||||| || |||||| Sbjct 2914331 TCCTTCTGGATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAT 2914390 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| ||||| ||| ||| Sbjct 2914391 ATGAGTCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTC 2914450 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | || ||| || || | ||| ||||| || || || || ||||| ||| Sbjct 2914451 TCTATTGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACA 2914510 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2914511 AACATCTGCAT 2914521 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||| ||| || || ||||| Sbjct 2912649 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAG 2912708 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| ||||| || | Sbjct 2912709 ATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTC 2912768 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||||| |||| || |||||| || | ||| |||||||| || || || || |||||| Sbjct 2912769 TCTATCGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACA 2912828 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 2912829 AACATCTGCATCTT 2912842 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| || |||| ||||||||||| || ||||| Sbjct 3993435 TCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 3993376 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||| || | || | || |||||||| ||||| || || || Sbjct 3993375 ATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCAC--AT 3993318 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | |||||| || | ||| ||||| || || ||||| ||||| | Sbjct 3993317 TCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTA 3993258 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 3993257 CAAAGATCTGCAT 3993245 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 3999168 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3999109 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | ||||||||||| ||||| || || || Sbjct 3999108 ATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTTAC--AT 3999051 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || ||||| || || | Sbjct 3999050 TCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGA 3998991 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 3998990 CAAAGATCTGCAT 3998978 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 3993664 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 3993605 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| || || || || | Sbjct 3993604 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCAC--A 3993547 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || ||||| || || Sbjct 3993546 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTG 3993487 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 3993486 ACGAAGATCTGCAT 3993473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || | || | ||| |||||||| ||||| ||||| ||| Sbjct 3999432 CCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3999373 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| || |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 3999372 AGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999313 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| || || || || || || || | |||| || ||| | Sbjct 3999312 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTAC--ATTCTCAATGGTGTCACTGGGCTCTA 3999255 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || ||||| || || || ||||||||||| Sbjct 3999254 CTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| ||||| || || | || |||| |||||||| ||||| ||||| Sbjct 3998941 TTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAA 3998882 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| || || || || Sbjct 3998881 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATT 3998822 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAG----TCT 34965 | | || | |||| || ||| || || | ||| ||||| || || ||||| | ||| Sbjct 3998821 TTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCT 3998762 Query 34966 TCACAAAGATCTGCAT 34981 ||||||| |||||||| Sbjct 3998761 TCACAAAAATCTGCAT 3998746 >seq14 Length=28847931 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| |||| |||||| || ||||| Sbjct 12556735 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAG 12556794 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || || || || ||||| ||||| | Sbjct 12556795 ATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTT 12556854 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || ||||| || || || || ||||||||| Sbjct 12556855 TCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 12556914 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 12556915 AAGATTTGCAT 12556925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| |||||| | ||| |||| || || || || || ||||| Sbjct 12557418 TTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAA 12557477 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || || || || ||||| ||||| Sbjct 12557478 GATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTTTCCTGGATCTTGGCCTTGACATT 12557537 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || ||| || || | || |||| || || || || |||||||| Sbjct 12557538 TTCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCAC 12557597 Query 34970 AAAGATCTGCATATT 34984 |||||| ||||| || Sbjct 12557598 AAAGATTTGCATCTT 12557612 Score = 82.4 bits (90), Expect = 5e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | ||| |||| || || || || || ||||| Sbjct 12556963 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCAAGTTGCTTACCAGCAAAG 12557022 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| ||||| | Sbjct 12557023 ATCAGACGCCGCTGGTCTGGGGGGATACCTTCCTTATCCTCGATCTTGGCCTTGACATTT 12557082 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || |||| || || || || ||||||||| Sbjct 12557083 TCAATGGTATCACGGGGCTCCACTTCCAGAGTGATGGCCTTGCCAGTCAGGGTCTTCACA 12557142 Query 34971 AAG 34973 ||| Sbjct 12557143 AAG 12557145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324516318300504