Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13 118 9e-21 seq19 113 4e-19 seq4 100 2e-15 seq14 91.5 1e-12 >seq13 Length=21921923 Score = 118 bits (130), Expect = 9e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| || || ||||| |||||||| || || || || |||||||||| Sbjct 10464390 ATGCAGTTATCACTGTTCCTGCCTATTTCAATGACTCCCAGCGCCAGGCAACTAAAGATG 10464449 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| |||||||||| |||| || || |||||||| || |||||||| || Sbjct 10464450 CTGGAACCATTAGTGGACTTAATATTCTCCGCATCATCAATGAGCCCACTGCTGCAGCCA 10464509 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| || || || || ||| Sbjct 10464510 TTGCTTACGGCCTGGACAAA 10464529 >seq19 Length=17744385 Score = 113 bits (124), Expect = 4e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || |||||||| ||||| |||||| || ||||| |||| || || Sbjct 3993694 CCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGT 3993635 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || ||||| || ||||| || || || ||||||||||| ||||| || Sbjct 3993634 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 3993575 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || ||||| || || |||||| || ||| || | | || || Sbjct 3993574 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAG 3993515 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| || ||||| ||||| || ||||| Sbjct 3993514 GGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3993473 Score = 113 bits (124), Expect = 4e-19 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| || || |||||||| || ||||| || ||||| |||| Sbjct 6849122 ATGCAGTCATCACAGTGCCAGCTTACTTCAATGACTCTCAGCGTCAGGCCACTAAGGATG 6849181 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| | || |||||||| | ||||| || |||||||| ||||||||||| Sbjct 6849182 CTGGAACTATCTCAGGCCTTAATGTCTTGCGTATCATTAATGAACCCACTGCTGCTGCTA 6849241 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 6849242 TTGCCTATGG 6849251 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || Sbjct 3999427 CCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGG 3999370 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 | | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 3999369 GAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 3999310 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTC 563429 ||||| || || || ||||| ||||| |||||| || ||| || | ||| ||| Sbjct 3999309 CCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC-TTC 3999251 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| || || ||||| || ||||| ||||| || ||||| Sbjct 3999250 AAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 Score = 105 bits (116), Expect = 5e-17 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || Sbjct 3999199 CCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGG 3999142 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 3999141 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 3999082 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTC 563429 || || || || || || ||| ||||| |||||| || ||| || | ||| ||| Sbjct 3999081 CCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC-TTC 3999023 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| || || ||||| || ||||| || || || ||||| Sbjct 3999022 AAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 104 bits (114), Expect = 2e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || ||||||||||| ||| |||||| || ||||| || | ||||| Sbjct 3998971 CCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGT 3998912 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 3998911 ACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 3998852 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCGA 563431 ||| || || || ||||| ||||| ||||| || ||| || | ||| ||| | Sbjct 3998851 TTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTAC-TTCAA 3998793 Query 563432 GAGTAACAGTTTTACC----AGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||| || || || ||| || || || || ||||| ||||| Sbjct 3998792 GGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 96.9 bits (106), Expect = 3e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || ||||| || || || ||||||||||| ||||| ||||| || Sbjct 3994384 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3994325 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 ||||| ||||| ||||| |||||| || ||| || | | || || |||| Sbjct 3994324 GTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 3994265 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || ||||| ||||| || ||||| Sbjct 3994264 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 Score = 96.9 bits (106), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 549974 ATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGT 550033 || |||||||| | ||| | ||||| ||| | || ||||| || ||||||||| Sbjct 6848315 ATCATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGT 6848374 Query 550034 GTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCA 550093 || | || |||| ||||||||||| |||||||| || || || ||||| || || || Sbjct 6848375 GTATTCCAGCATGGCAAAGTTGAAATCATTGCCAACGACCAGGGCAACAGGACAACACCC 6848434 Query 550094 TCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 ||||||| ||||||| || | ||| || |||| |||||||| || |||| Sbjct 6848435 AGTTATGTTGCTTTCACAGACTCAGAAAGGTTGATTGGAGATGCAGCCAAGAATCA 6848490 Score = 91.5 bits (100), Expect = 1e-12 Identities = 231/346 (67%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| |||||||||| | ||||| || || || ||||| || | || || ||| | ||| Sbjct 6849550 GCTGTTCGTCGTCTGCGTACTGCCTGTGAGAGGGCCAAGCGCACACTGTCCTCTAGCACT 6849609 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| || ||| | || || | | |||||| |||| | | || | || | Sbjct 6849610 CAGGCCAGCATCGAAATCGACTCCCTGTACGAGGGAGTTGACTTCTACACATCCATCACC 6849669 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| |||||||| | | |||||||||| | || | || || || || Sbjct 6849670 AGGGCTCGGTTTGAAGAGCTCAATGCTGATCTCTTCCGTGGCACCTTGGACCCTGTGGAG 6849729 Query 552075 CAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||| | | | ||| ||||||| || || || | | ||||| || ||| | ||||| Sbjct 6849730 -AAGTCTCTCCGGGATGCAAAGATGGACAAGTCACAGATTCATGACATCGTGTTGGTTGG 6849788 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAA 552192 ||| || || | || || ||||| | | || | || ||| ||||||||| || Sbjct 6849789 TGGCTCCACCCGTATCCCCAAAATCCAGAAGCTGCTCCAGGACTT-TTTCAATGGAAAGG 6849847 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | || | || | ||||||||||||||||| ||||||||||| Sbjct 6849848 AGCTCAACAAGAGCATCAATCCAGATGAGGCTGTGGCCTATGGTGC 6849893 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || Sbjct 3993466 CCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGG 3993409 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 | | |||||| || ||||| || ||||| || || ||||||||||| || ||||| Sbjct 3993408 GGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATG 3993349 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || ||| || || |||||| || ||| | | | || Sbjct 3993348 CCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCA 3993289 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || || || || ||||| Sbjct 3993288 AGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 Score = 86.0 bits (94), Expect = 5e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || ||||||||||| ||| |||||| || ||||| || | ||||| Sbjct 3995323 CCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGT 3995264 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||| || ||||| || ||||| || || || ||||||||||| ||||| || Sbjct 3995263 ACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 3995204 Query 563373 TTCTTTATCTTG 563384 ||| || || || Sbjct 3995203 TTCCTTGTCCTG 3995192 >seq4 Length=20010643 Score = 100 bits (110), Expect = 2e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT- 550465 ||||||| || || || ||||||||||| || ||||| || || ||||| || || ||| Sbjct 14416591 TAACTGTTCCCGCCTACTTTAATGACTCGCAGCGTCAGGCCACCAAAGACGCCGG-CGTG 14416533 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| ||||| || || |||||||| ||||| || || ||||||||||| | || || Sbjct 14416532 ATTGCCGGACTCAACGTGCTTCGTATCATCAACGAGCCGACTGCTGCTGCCATCGCCTAC 14416473 Query 550526 GGACTTGATAAA 550537 || || || ||| Sbjct 14416472 GGTCTGGACAAA 14416461 >seq14 Length=28847931 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || |||||||| |||||||| |||| ||| || || ||||| |||| || || Sbjct 12557389 CTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTG 12557448 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||||||||| || || ||||| || || | |||||||| || || || ||| Sbjct 12557449 CGTCCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCT 12557508 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| || || || || || || ||||| |||||| | | | || ||| || Sbjct 12557509 TCTTTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCA-CGGGGCTCCACTTCCAG 12557567 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | | || ||||| || || || || || |||||||| Sbjct 12557568 AGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12557609 Score = 89.7 bits (98), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || |||||||| |||||||| ||||| ||| | ||| || ||||| |||| || | Sbjct 12556705 CTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAAAGGG 12556762 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| | ||||| || ||||| || || | ||||| || || || || | Sbjct 12556763 TGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATAC 12556822 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||||||||| || || || || || ||||| |||||| || | | || ||| Sbjct 12556823 CTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTG-GGCTCCACTTCC 12556881 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || ||||| || || || || || |||||||| Sbjct 12556882 AGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027728344470070