Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 seq22 107 2e-18 >seq3 Length=16251686 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 14874778 AGTCCCGTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGA 14874837 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || ||||||||||| | || | |||||| |||||||| |||||||| || || | | Sbjct 14874838 ACTCCCAGCCCCATGTCAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACAC 14874897 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| |||||||| |||| ||| || || || || ||||||||| Sbjct 14874898 ACGTAGAACTGACAGATGGCGTGACATGGCGGCAGGGCCATGAGG 14874942 Score = 154 bits (170), Expect = 1e-32 Identities = 146/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| ||||||| || || || |||||||||||||| |||||||| ||||||||||| Sbjct 14876085 CATGTCTTTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTC 14876144 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| |||| ||| || |||||||| ||| | | || || |||||||| Sbjct 14876145 GCCTTCTTCTCTGTCTGTGAAACCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTC 14876204 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC- 30327 |||||| || ||||||||||| || |||||||||| |||||| || |||| ||| ||| Sbjct 14876205 CCAGATTTTCACCCCCTTCTCTGAAAGCTCTTTGGCGTTTGTTGATCCCTGTGATAAACA 14876264 Query 30328 CACA 30331 |||| Sbjct 14876265 CACA 14876268 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 |||||||||||||||| |||| |||||| | ||||||||||| ||||| ||||| || Sbjct 14875878 CTTTGGGGTTCCAGGCACACATGATGATCCTTCTGTCTTCTGGATTGTTTTTGATGGTGT 14875937 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCC 30128 | | | | |||| |||||| ||||| || Sbjct 14875938 CGATGACATTTTTCAGCTGGTCCACACC 14875965 >seq22 Length=21910988 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 112111 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 112170 ||||||||||| | ||| || |||| || || |||||||| || || |||||||| ||| Sbjct 4790178 CTGCTGAGGACAATGTTGATTCTGTTTCGCAAAGGTCTATGGTTCTCTGGGATGGAAAAC 4790237 Query 112171 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 || |||||||||||||| |||||||||||||| || ||| Sbjct 4790238 CACGTCTTTCTACCCATGATCACCACGTTCTGTTTACCT 4790276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408469977059639