Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14 122 7e-23 seq19 120 2e-22 >seq14 Length=28847931 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| ||||| | ||| | ||| | ||| ||||| || || || || || ||||| || Sbjct 12556696 TTTCCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 12556755 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | | |||| ||||| || ||||| ||||| |||| |||||| || || || Sbjct 12556756 GAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGG 12556815 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||||||||| || || || || ||| |||| | || ||| | ||| Sbjct 12556816 GGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCC 12556875 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||||| || ||||| || | || || ||||| || ||||| Sbjct 12556876 ACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 12556925 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | ||| |||| ||||| || || || ||||| || | Sbjct 12557155 CCCCCCCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557214 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | |||||| || ||||| |||| |||||| ||||| || || Sbjct 12557215 AGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557274 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| || | || || ||| |||| | || ||| | |||||| Sbjct 12557275 ATACCTTCTTTATCCTGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTCCACT 12557334 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || ||||| || | || ||||| || ||||| Sbjct 12557335 TCCAGAGTGATGGTCTTGCCAGTCGGGTTCTTCACAAAGATTTGCAT 12557381 >seq19 Length=17744385 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || | ||| | ||| | ||| || || || || || || || ||||| |||| Sbjct 2910121 TTCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2910180 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | |||| || | || || || ||||| || | |||||| || || || | Sbjct 2910181 AGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 2910240 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||||||||| || ||||| ||| | | |||| | |||||| | ||| Sbjct 2910241 GAATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCG 2910300 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||| || ||||| || | ||||| ||||| |||||||| Sbjct 2910301 CCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 120 bits (132), Expect = 2e-22 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | |||||| |||||||||||||| || ||||| |||| Sbjct 3998976 CCACCCCTAAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGAC 3998917 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 3998916 AGAGTACGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3998857 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| |||||| |||| | |||||| | || ||| Sbjct 3998856 ATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACT 3998797 Query 101423 TCAAGAGTGACCGTTTTGCC----GGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || | || ||||| || | || || ||||| ||||||||| Sbjct 3998796 TCAAGGGTAATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCATG 3998745 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||| | |||||||| | ||| ||||| || || || || || || || || | Sbjct 2914294 TCCTCCTCTGAGGCGTAAAACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGA 2914353 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 || ||| | | |||| |||| || || ||||||||||| | | ||| || || || || Sbjct 2914354 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGG 2914413 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 |||||| || || || || || || ||| || | |||| ||||| | || || Sbjct 2914414 AATGCCCTCCTTGTCCTGGATCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGAC 2914473 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || |||| || ||||| |||| || || ||||| |||||||| || Sbjct 2914474 CTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACAAACATCTGCATCGT 2914524 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| || ||||| || || ||||| || | | Sbjct 3993471 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 3993412 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | | | |||| |||| || || || ||||| |||| | || |||||||| ||| Sbjct 3993411 AGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGA 3993352 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || ||| || ||| | || | ||||||| | || || Sbjct 3993351 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACC 3993292 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| |||| || ||||| || | || |||||||| |||||||| ||| Sbjct 3993291 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATTGTT 3993241 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| ||||| || ||||| || || ||||| || | Sbjct 3999432 CCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 3999373 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | | | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 3999372 AGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3999313 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| |||||| | || | |||||| | || ||| Sbjct 3999312 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACT 3999253 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || | || ||||| || | ||||| || || ||||||||| Sbjct 3999252 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3999205 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || |||| || | || ||||| || || || || || ||||| || | | Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | || | ||||| |||||||| ||||| || | |||||| || || || || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| || ||||| || | | |||| || ||| | |||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| |||||||| |||| || || || || |||||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| |||||||| || || ||||| || | | Sbjct 3993699 CCACCCCTAAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 3993640 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| || || || ||||| |||| | ||| ||||| || ||| Sbjct 3993639 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3993580 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || ||| | || | |||||| | || || Sbjct 3993579 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3993520 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || | || ||||| || | ||||| || || ||||||||| Sbjct 3993519 TCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3993472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||| || || || ||||| |||| | ||| ||||| || ||||||||||| | Sbjct 3994385 CATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCT 3994326 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | ||||| ||||| |||||| | || | |||||| | || || ||||| || | Sbjct 3994325 TGTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAA 3994266 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | ||||| || || ||||||||| Sbjct 3994265 TGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 3994228 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| || || | ||| | || | |||||| |||||||||||||| || ||||| |||| Sbjct 3995329 TCCACCCCTAAGACGCAGGACAAGATGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGA 3995270 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 || ||| | | || |||| || || || ||||| |||| | ||| ||||| || || Sbjct 3995269 GAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3995210 Query 101362 AATGCCTTCTTTATCTTG 101379 ||||||||| || || || Sbjct 3995209 AATGCCTTCCTTGTCCTG 3995192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396135234892551