Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19 105 5e-18 >seq19 Length=17744385 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| || | ||| || ||| |||||| || || ||||| ||||| Sbjct 3999205 GCCACCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 3999146 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| ||||| | ||| Sbjct 3999145 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 3999086 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| |||||| | | | || | ||| || Sbjct 3999085 AATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTAC 3999026 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 3999025 TTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3998978 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || || | || | ||| |||||| |||||| || || ||||| ||| | Sbjct 2910579 CCCCCCCGTACGCGTAGGACGAGATGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACAC 2910638 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||||| || |||| |||||| | ||||| || || ||||| ||||| | | Sbjct 2910639 AGGGTTCGATCATCTTCCAGTTGCTTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAG 2910698 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717 | ||||||||||| || || |||||| | | | ||| | || | ||| | Sbjct 2910699 ATTCCCTCCTTGTCCTGGATTTTAGATTTTAC--ATTCTTGAAACTGTCACTTGGCTCAA 2910756 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || || || || || |||| || || ||||| ||||||||| Sbjct 2910757 CCTCCAATGTTATGGTCTTCCCGGTCAGGGTCTTAACAAACATCTGCATC 2910806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380799977125689