Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 291 2e-73 seq18 107 4e-18 seq19 105 1e-17 seq7 102 2e-16 >seq4 Length=20010643 Score = 291 bits (322), Expect = 2e-73 Identities = 867/1320 (66%), Gaps = 38/1320 (3%) Strand=Plus/Plus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 || ||| ||| ||||||| ||| ||||| || || | | ||| | |||| | || Sbjct 16960113 ACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCA-GCTGGC 16960171 Query 221417 GTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGG 221475 || ||||| |||| |||||||||||| ||||| ||||||| || || || || Sbjct 16960172 CTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGG 16960231 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || || | ||||| || ||| |||| ||||| ||||| || || || || Sbjct 16960232 GCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCC 16960291 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 || |||||||| | | ||||||| | || || ||||| ||||| |||||| ||| Sbjct 16960292 TATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTC 16960351 Query 221596 GATCAGATTGTTGAGGTT-CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 || | ||||| || || | || ||| || || ||||| ||||| || | Sbjct 16960352 TATGATCTTGTTCAGATTTCTGAC-GATCACCTTGGTCACCTGTGTCAGTTTGT------ 16960404 Query 221655 TGAACACC-AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 |||| | || || ||| | | || | || ||| ||| || || | | Sbjct 16960405 TGAAGTCATAAGTC--CGCTCTGG-GGTGACGT---ACAT----GTTGAGAGCGATGGAC 16960454 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 ||||| ||||| |||||||||||||| || |||| |||| | ||| ||||| || ||| Sbjct 16960455 GCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGG 16960514 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||||||||| ||||||| | || || ||| | ||| ||||| ||| Sbjct 16960515 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 16960574 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| |||| || || || ||| | | | | || || ||| || | | Sbjct 16960575 TAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGT 16960634 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCA 221951 || ||||| | ||| ||||||| | ||| ||||||| || |||||| Sbjct 16960635 TGAGCCTTCACCACGCGCTT-----CACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCT 16960689 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 || ||||| || || | ||||||||| || |||||| ||||||||| || Sbjct 16960690 CCTCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTG 16960749 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| || |||| || ||||||| |||||| ||||| |||||||||| || | | Sbjct 16960750 ACCAGTCCTGGTTGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGA 16960809 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 ||||||||| | | |||||||||| || |||| ||| | ||||||| || |||| Sbjct 16960810 AGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAA 16960869 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | |||| ||||| ||||||| || | ||| | || || || ||||||||||||| Sbjct 16960870 AGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCAC 16960929 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||||||| | | | ||| | | | || | || ||||| ||||| | Sbjct 16960930 CCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTG 16960989 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | |||||||| || ||||| || || || | | || | | || | Sbjct 16960990 AGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCACAC 16961049 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 |||| || ||||| || ||||| | ||||||| |||| || ||||| |||||| | Sbjct 16961050 CGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTT 16961109 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||| ||||| | | |||||| || || |||| ||| | | ||| | Sbjct 16961110 CGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGTTC 16961169 Query 222432 AGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491 ||||| || |||||||| ||||| || || | | |||| ||| | ||| | Sbjct 16961170 CTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGG 16961229 Query 222492 TCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGCATCTCATGTACAT 222549 | | | | | | |||| | | | ||| || | || | | | | |||| ||| Sbjct 16961230 TATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACA-GACAC-CCGCATGAGCAT 16961287 Query 222550 GTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAG 222606 || |||||| | || |||| || || || || |||||||| || | ||||| Sbjct 16961288 GTGCTGGGGACGCTCTGCCACTTTGCCGTT-GATCT--TCAGCAGGTAGGACCTCTCCAG 16961344 Query 222607 AGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAG 222666 ||||||||| |||||| ||||| | ||||||||| ||| || | ||| | || ||| Sbjct 16961345 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAG 16961404 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| || || |||| || || ||||| ||| | |||| || || |||||| | Sbjct 16959830 CATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGAT 16959889 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || || || || | ||| | ||| ||| | || |||||| Sbjct 16959890 CTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 16959949 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| ||||||||||| |||| ||||||||| Sbjct 16959950 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACT 16960009 Query 221245 GTT 221247 ||| Sbjct 16960010 GTT 16960012 >seq18 Length=15207555 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | || |||||||||||||||||||| ||||||||| ||||| || Sbjct 10925680 TTAGGTGAGCGAATTGTGGCCTTTGCTGCTGTGGAGGGAATCTTTTTCTCTGGTTCATTC 10925739 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||| |||||||||| ||| || ||||| ||||| || || || ||| Sbjct 10925740 GCTGCCATCTACTGGCTCAAGAAGAGAGGCCTAATGCCTGGGCTTACCTACTCTAATGAG 10925799 Query 25990 CTCATCAGCAGGGACGAGG 26008 || |||||||| || |||| Sbjct 10925800 CTGATCAGCAGAGATGAGG 10925818 >seq19 Length=17744385 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | |||||||||||| ||||||||||| || || || ||||||| || ||| Sbjct 13833783 ACCCGTTTCATGAAGAGGTCTGGGATCCACAGAGCAAAGAACAGGTCTCTGGCCCTCTGT 13833724 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 ||||| || |||| ||| |||| || || || ||||| | ||||| |||||||||| Sbjct 13833723 TCCTCTTTCCCCGTGTTCTTCTTCAGTTCTAAGAAGTCAAACACGTCAGAGTGCCACGGC 13833664 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||| || || | || || |||| || Sbjct 13833663 TCCAGATACACAGCGAAGGCTCCAGGTCTCT 13833633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 |||||| |||| ||||||||||||||||||| |||| ||| || ||||| || | Sbjct 13834799 CAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGTAACTGGGCCTTTGG-GC 13834741 Query 221479 AGTGAAGGGCATACGCAGCATCTGA---AAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 | || || ||| || |||| || ||| | |||||||| ||||| || ||||| || Sbjct 13834740 TTTCAAAGGGATA-GC-GCATGAGAATGAAGGCATCGGCCAGACCCTGGACACCGATGCC 13834683 Query 221536 GATGGGCCTGTGTCTCCTGTTGGA 221559 ||||| ||||||| ||||||||| Sbjct 13834682 AATGGGTCTGTGTCGCCTGTTGGA 13834659 >seq7 Length=13814722 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| |||| ||||||||||| |||||||| || || ||| ||||| || || Sbjct 13788542 GGAGAGCGGGTGGTGGCCTTTGCTGCAGTGGAGGGAATTTTCTTCTCTGGTTCCTTCGCT 13788601 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||| | ||| || || |||||||| || ||| ||||| ||||| Sbjct 13788602 GCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGCTTGACCTTCTCCAATGAGCTG 13788661 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| || |||| Sbjct 13788662 ATCAGCAGAGATGAGG 13788677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928500628169920