Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19 122 6e-22 seq13 100 2e-15 seq14 91.5 1e-12 >seq19 Length=17744385 Score = 122 bits (134), Expect = 6e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || |||||||| ||||| || ||||| |||||||| |||||||| ||||| | Sbjct 6838552 ATGCCGTCATCACTGTTCCTGCATACTTCAATGACTCTCAACGCCAAGCAACCAAAGACG 6838493 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| | || |||||||| || | ||||||||||| || || ||||| || Sbjct 6838492 CTGGAACAATCTCTGGCCTTAATGTATTGAGAATTATTAATGAGCCCACTGCAGCTGCCA 6838433 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| |||||| | || ||||| Sbjct 6838432 TTGCCTATGGTTTGGACAAGAA 6838411 Score = 113 bits (124), Expect = 3e-19 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || ||||||||||| ||| |||||| | || || || | ||||| | Sbjct 3998968 AAGACGCAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACG 3998909 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 |||||| || |||||||||||||| || || | || |||||||| ||||| ||||| Sbjct 3998908 ACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3998849 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 |||||| || || || || ||| |||||| || ||| || | ||||||||| Sbjct 3998848 CTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 3998789 Query 480734 AATAGTTTTACC----GGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| ||||| || ||||| || Sbjct 3998788 AATGGTCTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTG 3998749 Score = 113 bits (124), Expect = 3e-19 Identities = 120/156 (77%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || || ||||| || || ||||| ||||| ||||| || ||||| |||| Sbjct 6849122 ATGCAGTCATCACAGTGCCAGCTTACTTCAATGACTCTCAGCGTCAGGCCACTAAGGATG 6849181 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || |||| |||||||| || ||||| ||||||||||| || || || || Sbjct 6849182 CTGGAACTATCTCAGGCCTTAATGTCTTGCGTATCATTAATGAACCCACTGCTGCTGCTA 6849241 Query 474855 TTGCTTATGGTCTTGATAAGAA--TTC-TGACAAAG 474887 |||| |||||| | || || || | | |||||||| Sbjct 6849242 TTGCCTATGGTTTGGACAAAAAGGTACTTGACAAAG 6849277 Score = 102 bits (112), Expect = 5e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || |||||||| || || |||||| | || || |||| || || | Sbjct 3993691 AAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 3993632 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | |||||| || || || |||||||| || || | || |||||||| ||||| ||||| Sbjct 3993631 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 3993572 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 |||||| || || || || ||| ||||| || ||| || | | |||||||| Sbjct 3993571 CTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 3993512 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| || || ||||| || || Sbjct 3993511 AATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTG 3993476 Score = 102 bits (112), Expect = 5e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || |||||||| || || ||||| | || || |||| || || | Sbjct 3999196 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 3999137 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | |||||| || ||||| |||||||| || || | || |||||||| ||||| || || Sbjct 3999136 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTC 3999077 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 |||||| || |||||| || ||| ||||| || ||| || | ||||||||| Sbjct 3999076 CTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 3999017 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| || || || || || || Sbjct 3999016 AATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTG 3998981 Score = 96.9 bits (106), Expect = 2e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || |||||||| || || ||||| | || || |||| || | | Sbjct 3993463 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCG 3993404 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | |||||| || || || |||||||| || || | ||| ||||| || ||||| ||||| Sbjct 3993403 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTC 3993344 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 |||||| || |||||| || ||| |||||||| ||| | | | |||||||| Sbjct 3993343 CTTGTCCTGGATCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGT 3993284 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || || || || Sbjct 3993283 GATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 3993248 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || |||| || | | | Sbjct 3999423 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGG 3999364 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||| Sbjct 3999363 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 3999304 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || || || || ||| ||||| || ||| || | |||||||||| Sbjct 3999303 TTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTA 3999244 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || || ||||| || || Sbjct 3999243 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTG 3999209 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||||||| | || || || ||| ||||| | ||| | || |||| ||| Sbjct 6848333 GCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTATTCCAGCATGGCAAA 6848392 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||| ||||| || || || |||||||| |||||| |||| || Sbjct 6848393 GTTGAAATCATTGCCAACGACCAGGGCAACAGGACAACACCCAGTTATGTTGCTTTCACA 6848452 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || | ||| | ||||||||||| || || |||| | ||| Sbjct 6848453 GACTCAGAAAGGTTGATTGGAGATGCAGCCAAGAATCAGGTTGC 6848496 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || |||||||| || || | || |||||||| ||||| |||||||| Sbjct 3994384 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 3994325 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| || || || ||| ||||| || ||| || | | ||||||||||| Sbjct 3994324 GTCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 3994265 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || ||||| || || Sbjct 3994264 GGTCTTGCCAGTGAGGGTTTTGACGAAGATCTG 3994232 Score = 87.8 bits (96), Expect = 1e-11 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | ||||||||| | || || || ||| ||||| | ||| | || |||| ||| Sbjct 6839223 GCAGTCGGTATTGATCTCGGGACCACCTACTCCTGTGTTGGTGTATTCCAGCATGGCAAA 6839164 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| || || | || ||| Sbjct 6839163 GTTGAAATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTACGTGGCCTTCACT 6839104 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 || || || || ||||||||||| || || |||| | |||| ||||| Sbjct 6839103 GACACAGAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCAATGAATCC 6839051 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || || ||||||||| | || |||||||| |||||||| || |||||||||||||| Sbjct 6837268 GGCATCCCCCCTGCTCCCCGTGGTGTTCCTCAGATTGAAGTGACATTTGATATTGATGCC 6837209 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| ||| | ||||| ||||| ||| || Sbjct 6837208 AATGGCATTATGAATGTCTCTGCTGCTGACAA 6837177 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || || ||||||||| | || |||||||| |||||||| || |||||||||||||| Sbjct 6850380 GGCATCCCCCCTGCTCCCCGTGGTGTTCCTCAGATTGAAGTGACATTTGATATTGATGCC 6850439 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| ||| | ||||| ||||| ||| || Sbjct 6850440 AATGGCATTATGAATGTCTCTGCTGCTGACAA 6850471 >seq13 Length=21921923 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||| ||||| ||| | || || |||||||| | || || | ||| | || || Sbjct 10465587 TGAGGGTGAGAGAGCCATGACAAAGGATAATAATATTCTGGGCAAGTTTGAGCTGACGGG 10465646 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||||||||||||||||||||| ||||| ||||| || || ||||| |||||||| || Sbjct 10465647 AATTCCTCCTGCTCCCAGAGGAGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 10465706 Query 476152 TGGTATTCTTAATGT 476166 ||| ||||| ||||| Sbjct 10465707 TGGCATTCTGAATGT 10465721 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || |||||||| || ||||| ||||| || || || || ||||||||||||| Sbjct 10464390 ATGCAGTTATCACTGTTCCTGCCTATTTCAATGACTCCCAGCGCCAGGCAACTAAAGATG 10464449 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| || |||||| || | || || || ||||| || || || || || Sbjct 10464450 CTGGAACCATTAGTGGACTTAATATTCTCCGCATCATCAATGAGCCCACTGCTGCAGCCA 10464509 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||| || || || || || Sbjct 10464510 TTGCTTACGGCCTGGACAAAAA 10464531 >seq14 Length=28847931 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| |||||||| || | ||| || | || || |||| || || | Sbjct 12557392 AGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGT 12557451 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||||||||||||| |||||||| || ||||| || ||||| || || || ||||| Sbjct 12557452 CCATCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCT 12557511 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || || ||||| |||||| |||||| |||||| | | ||| || || Sbjct 12557512 TTTTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACGGGGCTCCACTTCCAGAGTG 12557571 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || || || ||||| || || ||||| Sbjct 12557572 ATGGCCTTGCCAGTCAGGGTCTTCACAAAGATTTG 12557606 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||| ||||| ||||| | | || ||||| || ||| | || || Sbjct 24212474 GTGGAGATCATTGCCAACGACCAGGGTAACCGTATCACCCCATCGTACGTTGCCTTCACC 24212415 Query 474449 ---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 || ||| | ||| ||||| |||||||| ||| | | ||||| | ||||| || | Sbjct 24212414 AGCGAGGGTGAGCGTCTGATTGGTGATGCTGC-AAAGAACCAGCTGACCTCTAACCCAGA 24212356 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || ||| ||||||| || || ||||||||||| |||| || | ||| || ||||||| Sbjct 24212355 AAACACTGTTTTTGACGCCAAGAGATTGATTGGCCGTACTTGGGGTGACTCCTCTGTCCA 24212296 Score = 89.7 bits (98), Expect = 3e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| |||||||| || | ||| || | || || |||| || || | | Sbjct 12557164 AGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGG 12557223 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||||||||||||| |||||||| || ||||| || ||||| || || || ||||| Sbjct 12557224 CCATCTTCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGGGGGATACCTTCT 12557283 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || |||| |||||| |||||| |||||| Sbjct 12557284 TTATCCTGGTTCTTGGCCTTGACATTTTCAATGGTATCA 12557322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266907667902164