Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6 208 9e-49 >seq6 Length=18840743 Score = 208 bits (230), Expect = 9e-49 Identities = 537/805 (67%), Gaps = 15/805 (2%) Strand=Plus/Plus Query 160162 ACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCA 160221 |||| || || | ||| ||| | ||| |||| | |||||| ||||||| || || Sbjct 8843745 ACACACACACCGCTCGTCTGTAGGCACCGGTGCAGTGAGGGTACGGAGCTCCGTTGTTCA 8843804 Query 160222 CGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGT 160281 ||||||| | ||| |||||| || | || |||| |||||||||||||| | Sbjct 8843805 CGTCACCGGCCAGGTAGCTCCACTTGACCACCCGAGCTAAAGCCTGCATGTCGGATACAT 8843864 Query 160282 CGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCC 160341 |||| || | || || | ||||| || |||||| | ||| | ||||||| Sbjct 8843865 CGTACTTAATGTTGGCTGGTACAGATCCGGGGACCGAGGGCATCCTCTGGAACGTGGCCC 8843924 Query 160342 ACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA-CTCTCCGATTAAC 160400 ||| ||||||||| ||||||||||||||||| ||| || ||||| ||| || || Sbjct 8843925 ACATGTGTTCGTCTGGGCTGTACGTGTCCTTCTCCCACTCAATGAATTTCTGCGCTT-CT 8843983 Query 160401 CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAG 160460 ||||||||| || ||||| || | ||||| || | || ||| || | || ||| Sbjct 8843984 TTGTCCCGCATCACATGAGTCACAAATTCTCTGGAAACAATAATGTAGGCATTACCTGAG 8844043 Query 160461 AATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCT 160520 || ||||| || ||||||| || | | |||| || | || ||| | || | Sbjct 8844044 AACATCGGGCTGCGTATAGGTGGAG-GACTTT-TCGTCACATCTGTCCTA-ACGATGGAG 8844100 Query 160521 TTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCG 160578 | | | |||| | | || ||||| | |||||| || ||| || |||| Sbjct 8844101 TCCGTAACTTCGTGGTGATACTGCCACCGTGGCTTCTTGTAGTCGATGG--TGTTCTCCG 8844158 Query 160579 TCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTC 160637 |||| | ||||| || | | | ||||| ||| || ||||| || ||| || Sbjct 8844159 TCTCCATGCTGTTCCTCCCATTCAAGGTCTTCAG-TGCCTGTACGATTTCGCCGTTGGTT 8844217 Query 160638 TTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCG 160697 || | |||||||| || || || ||| | || |||||||| || |||| || | Sbjct 8844218 TTAATGGGAAAGTCTGTGCCACAGGTGTTCAGCAGATACTTCCACTTGACGCT--GGACT 8844275 Query 160698 T--GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTA 160755 | |||| ||| |||||| || | ||| || || || ||| |||| || |||||||| | Sbjct 8844276 TCAGCAGATCCTCCATGCAGTTCAGATCAGCTTGGACTCGGGTCCAAGACGCGTACACGA 8844335 Query 160756 CGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCG 160815 |||| |||| |||||||| | || ||||| ||||| | |||| ||| |||| | Sbjct 8844336 CGTTTTCTAACTTACTGGCGATGAACACGTTGGGAAAACAGGCAGCGATCCCCGCCACGG 8844395 Query 160816 CCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCG 160875 || || || || ||| ||||||| ||||| || || | ||||||||| | Sbjct 8844396 CCTTGTGAAATTCCTCCGGCGACTTCTGGTCCACATGCACACAGTAGACGTTCTGAGGAG 8844455 Query 160876 CGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGT 160935 ||||||||| | || | | || |||||||| || || | ||||||||| || || | Sbjct 8844456 CGTAGATGGATCGCAGAAGTCGTTCAAACATCTCGATTTTTTCATGGATCACTATGGAAT 8844515 Query 160936 AGGCTATCGGAAACTCGGTCTCCTC 160960 | || || || || || ||||||| Sbjct 8844516 AAGCGATGGGGAAGTCCTTCTCCTC 8844540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 160148 GTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAG 160207 ||| || | ||| |||||||||| ||| ||| ||| | ||| |||| |||| | Sbjct 8840461 GTCACCAGTCCCAAACACGCAGATGGATCGTCTGTAGGCACCGGTGCAGTCACCGTACGG 8840520 Query 160208 AGCTCCTTTCGCCACGTCACCT-TCGTAGTACTGCCACTTCAC-AAACCTGGCTATCGCC 160265 |||||||| ||| ||||| || || | | ||||||||| |||| | || | || Sbjct 8840521 GGCTCCTTTTCTCACATCACCGGTCAAAGAA-TCCCACTTCACCAAACGAGCCTGT-GCT 8840578 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 |||| ||| || || ||||| || | || || | ||||| || |||||| Sbjct 8840579 TGCAAGTCTGACGTATCGTACTTAATGTTGGCTGGTACAGATCCGGGGACCGAGGGCATC 8840638 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 | ||| | |||||||||| ||||||||| ||||||||||||||||| ||| || ||| Sbjct 8840639 CTCTGGAACGTGGCCCACATGTGTTCGTCTGGGCTGTACGTGTCCTTCTCCCACTCAATG 8840698 Query 160386 AA 160387 || Sbjct 8840699 AA 8840700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577005318640680